ENSDARG00000099427


Danio rerio

Features
Gene ID: ENSDARG00000099427
  
Biological name :nkx1.2lb
  
Synonyms : NK1 transcription factor related 2-like,b / nkx1.2lb
  
Possible biological names infered from orthology : NK1 homeobox 1 / NK1 transcription factor-related protein 1 / NKX1-1 / Q15270
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 15064870
Gene end: 15068562
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000131103
NCBI entrez gene - 407077     See in Manteia.
RefSeq - NM_213548
RefSeq Peptide - NP_998713
swissprot - A0A0R4IEB2
ZFIN ID - ZDB-GENE-040615-2
Ensembl - ENSDARG00000099427
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NKX1-1ENSGALG00000035650Gallus gallus
 NKX1-1ENSG00000235608Homo sapiens
 Nkx1-1ENSMUSG00000029112Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nkx1.2la / NK1 transcription factor related 2-like,a / Q9UD57* / NKX1-2* / P42580* / NK1 homeobox 2* / NK1 transcription factor-related protein 2 *ENSDARG0000000635030
mnx2b / motor neuron and pancreas homeobox 2bENSDARG0000003035017
pnx / F1R2J1 / posterior neuron-specific homeoboxENSDARG0000002589917
gbx1 / gastrulation brain homeobox 1 / P82976* / Q14549* / Homeobox protein GBX-1 *ENSDARG0000007141816
mnx2a / motor neuron and pancreas homeobox 2aENSDARG0000004210616
gbx2 / gastrulation brain homeobox 2 / P48031* / P52951* / Homeobox protein GBX-2 *ENSDARG0000000293315
mnx1 / motor neuron and pancreas homeobox 1 / P50219* / Q9QZW9*ENSDARG0000003598415
vox / ventral homeobox / VENTX* / O95231* / VENT homeobox*ENSDARG0000009976114
evx2 / even-skipped homeobox 2ENSDARG0000005925514
meox2a / mesenchyme homeobox 2a / MEOX2* / P50222* / P32443* / mesenchyme homeobox 2* / Homeobox protein MOX-2 *ENSDARG0000004091113
meox2b / mesenchyme homeobox 2b / MEOX2* / P50222* / P32443* / mesenchyme homeobox 2* / Homeobox protein MOX-2 *ENSDARG0000006181813
evx1 / even-skipped homeobox 1 / P23683* / P49640* / Homeobox even-skipped homolog protein 1 *ENSDARG0000010008713
ved / ventrally expressed dharma/bozozok antagonistENSDARG0000010238912
meox1 / F1Q4R9 / mesenchyme homeobox 1ENSDARG0000000789112
evx1 / even-skipped homeobox 1 / P23683* / P49640* / Homeobox even-skipped homolog protein 1 *ENSDARG0000009936512
vent / ventral expressed homeobox / VENTX* / O95231* / VENT homeobox*ENSDARG0000010048312
eve1 / even-skipped-like1ENSDARG0000005601212


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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