ENSDARG00000100483


Danio rerio

Features
Gene ID: ENSDARG00000100483
  
Biological name :vent
  
Synonyms : vent / ventral expressed homeobox
  
Possible biological names infered from orthology : O95231 / VENT homeobox / VENTX
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 50607664
Gene end: 50614639
  
Corresponding Affymetrix probe sets: Dr.10457.1.S1_at (Zebrafish Array)   Dr.10457.1.S2_at (Zebrafish Array)   Dr.23993.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130826
NCBI entrez gene - 64810     See in Manteia.
swissprot - Q9DGM9
ZFIN ID - ZDB-GENE-010108-2
Ensembl - ENSDARG00000100483
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VENTXENSG00000151650Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vox / ventral homeobox / VENTX* / O95231* / VENT homeobox*ENSDARG0000009976140
ved / ventrally expressed dharma/bozozok antagonistENSDARG0000010238929
gbx1 / gastrulation brain homeobox 1 / P82976* / Q14549* / Homeobox protein GBX-1 *ENSDARG0000007141825
gbx2 / gastrulation brain homeobox 2 / P48031* / P52951* / Homeobox protein GBX-2 *ENSDARG0000000293325
meox2a / mesenchyme homeobox 2a / MEOX2* / P50222* / P32443* / mesenchyme homeobox 2* / Homeobox protein MOX-2 *ENSDARG0000004091125
evx2 / even-skipped homeobox 2ENSDARG0000005925524
nkx1.2lb / NK1 transcription factor related 2-like,b / Q15270* / NKX1-1* / NK1 homeobox 1* / NK1 transcription factor-related protein 1 *ENSDARG0000009942724
meox2b / mesenchyme homeobox 2b / MEOX2* / P50222* / P32443* / mesenchyme homeobox 2* / Homeobox protein MOX-2 *ENSDARG0000006181823
evx1 / even-skipped homeobox 1 / P23683* / P49640* / Homeobox even-skipped homolog protein 1 *ENSDARG0000010008723
mnx2a / motor neuron and pancreas homeobox 2aENSDARG0000004210623
mnx1 / motor neuron and pancreas homeobox 1 / P50219* / Q9QZW9*ENSDARG0000003598422
mnx2b / motor neuron and pancreas homeobox 2bENSDARG0000003035022
pnx / F1R2J1 / posterior neuron-specific homeoboxENSDARG0000002589922
meox1 / F1Q4R9 / mesenchyme homeobox 1ENSDARG0000000789121
nkx1.2la / NK1 transcription factor related 2-like,a / Q9UD57* / NKX1-2* / P42580* / NK1 homeobox 2* / NK1 transcription factor-related protein 2 *ENSDARG0000000635021
evx1 / even-skipped homeobox 1 / P23683* / P49640* / Homeobox even-skipped homolog protein 1 *ENSDARG0000009936521
eve1 / even-skipped-like1ENSDARG0000005601219


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0009953 dorsal/ventral pattern formation IGI
 biological_processGO:0042661 regulation of mesodermal cell fate specification IGI
 biological_processGO:0042663 regulation of endodermal cell fate specification IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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