ENSDARG00000006350


Danio rerio

Features
Gene ID: ENSDARG00000006350
  
Biological name :nkx1.2la
  
Synonyms : NK1 transcription factor related 2-like,a / nkx1.2la
  
Possible biological names infered from orthology : NK1 homeobox 2 / NK1 transcription factor-related protein 2 / NKX1-2 / P42580 / Q9UD57
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 40770628
Gene end: 40775530
  
Corresponding Affymetrix probe sets: DrAffx.1.64.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000080281
NCBI entrez gene - 405755     See in Manteia.
swissprot - B8A4P8
ZFIN ID - ZDB-GENE-040615-1
Ensembl - ENSDARG00000006350
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NKX1-2ENSG00000229544Homo sapiens
 Nkx1-2ENSMUSG00000048528Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nkx1.2lb / NK1 transcription factor related 2-like,b / Q15270* / NKX1-1* / NK1 homeobox 1* / NK1 transcription factor-related protein 1 *ENSDARG0000009942739
pnx / F1R2J1 / posterior neuron-specific homeoboxENSDARG0000002589921
mnx2a / motor neuron and pancreas homeobox 2aENSDARG0000004210619
mnx2b / motor neuron and pancreas homeobox 2bENSDARG0000003035018
evx1 / even-skipped homeobox 1 / P23683* / P49640* / Homeobox even-skipped homolog protein 1 *ENSDARG0000010008718
gbx2 / gastrulation brain homeobox 2 / P48031* / P52951* / Homeobox protein GBX-2 *ENSDARG0000000293318
evx2 / even-skipped homeobox 2ENSDARG0000005925517
gbx1 / gastrulation brain homeobox 1 / P82976* / Q14549* / Homeobox protein GBX-1 *ENSDARG0000007141817
mnx1 / motor neuron and pancreas homeobox 1 / P50219* / Q9QZW9*ENSDARG0000003598417
meox1 / F1Q4R9 / mesenchyme homeobox 1ENSDARG0000000789116
evx1 / even-skipped homeobox 1 / P23683* / P49640* / Homeobox even-skipped homolog protein 1 *ENSDARG0000009936516
meox2a / mesenchyme homeobox 2a / MEOX2* / P50222* / P32443* / mesenchyme homeobox 2* / Homeobox protein MOX-2 *ENSDARG0000004091116
vox / ventral homeobox / VENTX* / O95231* / VENT homeobox*ENSDARG0000009976116
eve1 / even-skipped-like1ENSDARG0000005601215
meox2b / mesenchyme homeobox 2b / MEOX2* / P50222* / P32443* / mesenchyme homeobox 2* / Homeobox protein MOX-2 *ENSDARG0000006181815
ved / ventrally expressed dharma/bozozok antagonistENSDARG0000010238915
vent / ventral expressed homeobox / VENTX* / O95231* / VENT homeobox*ENSDARG0000010048313


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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