ENSG00000079482


Homo sapiens

Features
Gene ID: ENSG00000079482
  
Biological name :OPHN1
  
Synonyms : O60890 / oligophrenin 1 / OPHN1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: q12
Gene start: 68042344
Gene end: 68433913
  
Corresponding Affymetrix probe sets: 206323_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000347710
NCBI entrez gene - 4983     See in Manteia.
OMIM - 300127
RefSeq - XM_017029555
RefSeq - NM_002547
RefSeq - XM_006724653
RefSeq - XM_011530961
RefSeq - XM_005262270
RefSeq Peptide - NP_002538
swissprot - O60890
Ensembl - ENSG00000079482
  
Related genetic diseases (OMIM): 300486 - Mental retardation, X-linked, with cerebellar hypoplasia and distinctive facial appearance, 300486
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ophn1ENSDARG00000035420Danio rerio
 OPHN1ENSGALG00000029652Gallus gallus
 Ophn1ENSMUSG00000031214Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A6NI28 / Q9H2Q1 / ARHGAP42 / Rho GTPase activating protein 42ENSG0000016589551
Q9UNA1 / ARHGAP26 / Rho GTPase activating protein 26ENSG0000014581944
A1A4S6 / ARHGAP10 / Rho GTPase activating protein 10ENSG0000007120543
Q52LW3 / ARHGAP29 / Rho GTPase activating protein 29ENSG0000013796216
Q92619 / ARHGAP45 / Rho GTPase activating protein 45ENSG0000018044816
A7KAX9 / ARHGAP32 / Rho GTPase activating protein 32ENSG0000013490915
GMIP / Q9P107 / GEM interacting proteinENSG0000008963914
Q9H0H5 / RACGAP1 / Rac GTPase activating protein 1ENSG0000016180012
O14559 / ARHGAP33 / Rho GTPase activating protein 33ENSG0000000477712
Q2M1Z3 / ARHGAP31 / Rho GTPase activating protein 31ENSG0000003108111
Q7Z6I6 / ARHGAP30 / Rho GTPase activating protein 30ENSG0000018651711
Q15311 / RALBP1 / ralA binding protein 1ENSG0000001779710


Protein motifs (from Interpro)
Interpro ID Name
 IPR000198  Rho GTPase-activating protein domain
 IPR001849  Pleckstrin homology domain
 IPR008936  Rho GTPase activation protein
 IPR011993  PH-like domain superfamily
 IPR027267  AH/BAR domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0006930 substrate-dependent cell migration, cell extension TAS
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007399 nervous system development TAS
 biological_processGO:0007411 axon guidance TAS
 biological_processGO:0021707 cerebellar granule cell differentiation IMP
 biological_processGO:0021895 cerebral cortex neuron differentiation IMP
 biological_processGO:0030036 actin cytoskeleton organization IEA
 biological_processGO:0030100 regulation of endocytosis IEA
 biological_processGO:0030182 neuron differentiation IMP
 biological_processGO:0031175 neuron projection development IMP
 biological_processGO:0034329 cell junction assembly IMP
 biological_processGO:0035023 regulation of Rho protein signal transduction IMP
 biological_processGO:0043547 positive regulation of GTPase activity IEA
 biological_processGO:0045198 establishment of epithelial cell apical/basal polarity IMP
 biological_processGO:0048488 synaptic vesicle endocytosis IEA
 biological_processGO:0048667 cell morphogenesis involved in neuron differentiation IMP
 biological_processGO:0051056 regulation of small GTPase mediated signal transduction TAS
 biological_processGO:0051966 regulation of synaptic transmission, glutamatergic IEA
 biological_processGO:1901799 negative regulation of proteasomal protein catabolic process IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0015629 actin cytoskeleton IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043195 terminal bouton IEA
 cellular_componentGO:0043197 dendritic spine IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005096 GTPase activator activity TAS
 molecular_functionGO:0005543 phospholipid binding IDA
 molecular_functionGO:0035255 ionotropic glutamate receptor binding IEA


Pathways (from Reactome)
Pathway description
Rho GTPase cycle


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000046 Scrotal hypoplasia 
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 HP:0000054 Micropenis 
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 HP:0000219 Thin upper lip 
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000276 Long face 
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 HP:0000288 Abnormality of the philtrum "An abnormality of the `philtrum` (FMA:59819)." [HPO:probinson]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000322 Short philtrum 
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 HP:0000336 Prominent supraorbital ridges "Abnormal prominence of the supraorbital ridges, which are bony ridge located above the eye sockets in the area of the eyebrows." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000601 Hypotelorism 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000717 Autism 
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 HP:0000750 Impaired language development 
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 HP:0000752 Hyperactivity 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001310 Dysmetria 
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002167 Neurological speech impairment 
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 HP:0002280 Enlarged cisterna magna 
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 HP:0003189 Long nose 
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 HP:0003593 Early onset 
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 HP:0006951 Retrocerebellar cyst 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0007065 Disorganization of the anterior cerebellar vermis 
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0030260 Microphallus "Length of penis more than 2 SD below the mean for age accompanied by hypospadias." [HPO:probinson, pmid:23650202]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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