ENSG00000117984


Homo sapiens

Features
Gene ID: ENSG00000117984
  
Biological name :CTSD
  
Synonyms : cathepsin D / CTSD / P07339
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: p15.5
Gene start: 1752752
Gene end: 1764573
  
Corresponding Affymetrix probe sets: 200766_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000402586
Ensembl peptide - ENSP00000404902
Ensembl peptide - ENSP00000490897
Ensembl peptide - ENSP00000490770
Ensembl peptide - ENSP00000490598
Ensembl peptide - ENSP00000490471
Ensembl peptide - ENSP00000490344
Ensembl peptide - ENSP00000490316
Ensembl peptide - ENSP00000415036
Ensembl peptide - ENSP00000236671
Ensembl peptide - ENSP00000356164
NCBI entrez gene - 1509     See in Manteia.
OMIM - 116840
RefSeq - NM_001909
RefSeq Peptide - NP_001900
swissprot - A0A1B0GW44
swissprot - A0A1B0GVP3
swissprot - A0A1B0GVD5
swissprot - A0A1B0GV23
swissprot - A0A1B0GV01
swissprot - F8W787
swissprot - F8WD96
swissprot - H7C1V0
swissprot - P07339
swissprot - C9JH19
swissprot - V9HWI3
swissprot - A0A1B0GWE8
Ensembl - ENSG00000117984
  
Related genetic diseases (OMIM): 610127 - Ceroid lipofuscinosis, neuronal, 10, 610127
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ctsdENSDARG00000057698Danio rerio
 CTSDENSGALG00000006613Gallus gallus
 AC034099.1ENSMUSG00000110040Mus musculus
 CtsdENSMUSG00000007891Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC068580.4ENSG0000025064489
NAPSA / O96009 / napsin A aspartic peptidaseENSG0000013140045
CTSE / P14091 / cathepsin EENSG0000019618844
PGA3 / P0DJD8 / pepsinogen 3, group I (pepsinogen A)ENSG0000022985943
PGA4 / P0DJD7 / pepsinogen 4, group I (pepsinogen A)ENSG0000022918343
PGA5 / P0DJD9 / pepsinogen 5, group I (pepsinogen A)ENSG0000025671343
REN / renin / P00797ENSG0000014383940
PGC / P20142 / progastricsinENSG0000009608838


Protein motifs (from Interpro)
Interpro ID Name
 IPR001461  Aspartic peptidase A1 family
 IPR001969  Aspartic peptidase, active site
 IPR012848  Aspartic peptidase, N-terminal
 IPR021109  Aspartic peptidase domain superfamily
 IPR033121  Peptidase family A1 domain
 IPR033144  Cathepsin D


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006914 autophagy IBA
 biological_processGO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II TAS
 biological_processGO:0030163 protein catabolic process IBA
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0043312 neutrophil degranulation TAS
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005615 extracellular space ISS
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0031012 extracellular matrix IDA
 cellular_componentGO:0035580 specific granule lumen TAS
 cellular_componentGO:0042470 melanosome IEA
 cellular_componentGO:0043202 lysosomal lumen TAS
 cellular_componentGO:0045121 membrane raft IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:1904724 tertiary granule lumen TAS
 cellular_componentGO:1904813 ficolin-1-rich granule lumen TAS
 molecular_functionGO:0004190 aspartic-type endopeptidase activity IEA
 molecular_functionGO:0004197 cysteine-type endopeptidase activity TAS
 molecular_functionGO:0004252 serine-type endopeptidase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Metabolism of Angiotensinogen to Angiotensins
MHC class II antigen presentation
Neutrophil degranulation
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000572 Visual loss 
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 HP:0001105 Retinal atrophy 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001268 Mental deterioration 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001939 Metabolism abnormality 
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 HP:0002059 Cerebral atrophy 
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 HP:0002063 Rigidity 
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 HP:0002074 Autofluorescent lipopigment in neurons 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002133 Status epilepticus 
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 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
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 HP:0002878 Early respiratory failure 
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 HP:0003390 Sensory axonal neuropathy "An axonal neuropathy of peripheral sensory nerves." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0005458 Obliterated fontanelles "Normally, the posterior and lateral fontanelles are obliterated by about six months after birth, the anterior fontanelle closes by about the middle of the second year. This term refers to the situation in which the fontanelles close at an inappropriately early time point." [HPO:curators]
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 HP:0006887 Mental retardation, progressive "Mental retardation is defined as a decreased intelligence quotient of varying degree. The term progressive mental retardation should be used if intelligence decreases/deteriorates over time." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000117984 CTSD / P07339 / cathepsin D  / complex






 

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