ENSG00000128683


Homo sapiens

Features
Gene ID: ENSG00000128683
  
Biological name :GAD1
  
Synonyms : GAD1 / glutamate decarboxylase 1 / Q99259
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q31.1
Gene start: 170813213
Gene end: 170861151
  
Corresponding Affymetrix probe sets: 205278_at (Human Genome U133 Plus 2.0 Array)   206669_at (Human Genome U133 Plus 2.0 Array)   206670_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000394948
Ensembl peptide - ENSP00000486612
Ensembl peptide - ENSP00000476147
Ensembl peptide - ENSP00000434696
Ensembl peptide - ENSP00000405917
Ensembl peptide - ENSP00000403849
Ensembl peptide - ENSP00000402366
Ensembl peptide - ENSP00000341167
Ensembl peptide - ENSP00000350928
Ensembl peptide - ENSP00000364421
Ensembl peptide - ENSP00000394255
NCBI entrez gene - 2571     See in Manteia.
OMIM - 605363
RefSeq - XM_017003758
RefSeq - XM_017003757
RefSeq - XM_017003756
RefSeq - XM_011510922
RefSeq - XM_005246444
RefSeq - NM_013445
RefSeq - NM_000817
RefSeq Peptide - NP_000808
RefSeq Peptide - NP_038473
swissprot - C9JN45
swissprot - Q99259
swissprot - U3KQR2
swissprot - F8WD43
swissprot - A0A0S2Z3V5
swissprot - C9J6C9
swissprot - C9JLZ7
swissprot - C9JT43
Ensembl - ENSG00000128683
  
Related genetic diseases (OMIM): 603513 - ?Cerebral palsy, spastic quadriplegic, 1, 603513
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gad1aENSDARG00000093411Danio rerio
 gad1bENSDARG00000027419Danio rerio
 GAD1ENSGALG00000034070Gallus gallus
 Gad1ENSMUSG00000070880Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GAD2 / Q05329 / glutamate decarboxylase 2ENSG0000013675064
CSAD / Q9Y600 / cysteine sulfinic acid decarboxylaseENSG0000013963144
GADL1 / Q6ZQY3 / glutamate decarboxylase like 1ENSG0000014464442
DDC / P20711 / dopa decarboxylaseENSG0000013243720
HDC / P19113 / histidine decarboxylaseENSG0000014028720


Protein motifs (from Interpro)
Interpro ID Name
 IPR002129  Pyridoxal phosphate-dependent decarboxylase
 IPR015421  Pyridoxal phosphate-dependent transferase, major domain
 IPR015422  Pyridoxal phosphate-dependent transferase domain 1
 IPR015424  Pyridoxal phosphate-dependent transferase
 IPR021115  Pyridoxal-phosphate binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006538 glutamate catabolic process TAS
 biological_processGO:0006540 glutamate decarboxylation to succinate TAS
 biological_processGO:0007268 chemical synaptic transmission TAS
 biological_processGO:0007269 neurotransmitter secretion TAS
 biological_processGO:0009449 gamma-aminobutyric acid biosynthetic process IEA
 biological_processGO:0018352 protein-pyridoxal-5-phosphate linkage TAS
 biological_processGO:0019752 carboxylic acid metabolic process IEA
 biological_processGO:0035176 social behavior IEA
 biological_processGO:0035641 locomotory exploration behavior IEA
 biological_processGO:0042136 neurotransmitter biosynthetic process IEA
 biological_processGO:0042493 response to drug IEA
 cellular_componentGO:0005622 intracellular IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005938 cell cortex IEA
 cellular_componentGO:0012506 vesicle membrane NAS
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0043679 axon terminus IEA
 cellular_componentGO:0044306 neuron projection terminus IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0048786 presynaptic active zone IEA
 cellular_componentGO:0060077 inhibitory synapse IEA
 cellular_componentGO:0061202 clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane TAS
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004351 glutamate decarboxylase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016595 glutamate binding IEA
 molecular_functionGO:0016829 lyase activity IEA
 molecular_functionGO:0016831 carboxy-lyase activity IEA
 molecular_functionGO:0030170 pyridoxal phosphate binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0047485 protein N-terminus binding IEA


Pathways (from Reactome)
Pathway description
GABA synthesis
GABA synthesis, release, reuptake and degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001264 Spastic diplegia "Spasticity (neuromuscular hypertonia) primarily in the muscles of the legs, hips, and pelvis." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001425 Heterogeneous 
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0100021 Cerebral paralysis "Cerebral palsy describes a group of permanent disorders of the development of movement and posture, causing activity limitation, that are attributed to nonprogressive disturbances that occurred in the developing fetal or infant brain. The motor disorders of cerebral palsy are often accompanied by disturbances of sensation, perception, cognition, communication, and behaviour, by epilepsy, and by secondary musculoskeletal problems." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000136750 GAD2 / Q05329 / glutamate decarboxylase 2  / complex
 ENSG00000128683 GAD1 / Q99259 / glutamate decarboxylase 1  / complex






 

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