ENSG00000129159


Homo sapiens

Features
Gene ID: ENSG00000129159
  
Biological name :KCNC1
  
Synonyms : KCNC1 / P48547 / potassium voltage-gated channel subfamily C member 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: p15.1
Gene start: 17734774
Gene end: 17856804
  
Corresponding Affymetrix probe sets: 208477_at (Human Genome U133 Plus 2.0 Array)   230547_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000265969
Ensembl peptide - ENSP00000368785
Ensembl peptide - ENSP00000492663
Ensembl peptide - ENSP00000491700
Ensembl peptide - ENSP00000491644
Ensembl peptide - ENSP00000491345
Ensembl peptide - ENSP00000491247
Ensembl peptide - ENSP00000491189
Ensembl peptide - ENSP00000491016
NCBI entrez gene - 3746     See in Manteia.
OMIM - 176258
RefSeq - NM_004976
RefSeq - NM_001112741
RefSeq - XM_011520080
RefSeq Peptide - NP_001106212
RefSeq Peptide - NP_004967
swissprot - A0A1W2PNZ3
swissprot - A0A1W2PRL7
swissprot - P48547
swissprot - A0A1W2PNN0
swissprot - A0A1W2PPX0
swissprot - A0A1W2PPT0
swissprot - A0A1W2PPN9
swissprot - A0A1W2PP60
Ensembl - ENSG00000129159
  
Related genetic diseases (OMIM): 616187 - Epilepsy, progressive myoclonic 7, 616187
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 kcnc1aENSDARG00000051852Danio rerio
 kcnc1bENSDARG00000032959Danio rerio
 KCNC1ENSGALG00000006220Gallus gallus
 Kcnc1ENSMUSG00000058975Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
KCNC3 / Q14003 / potassium voltage-gated channel subfamily C member 3ENSG0000013139873
KCNC4 / Q03721 / potassium voltage-gated channel subfamily C member 4ENSG0000011639671
KCNC2 / Q96PR1 / potassium voltage-gated channel subfamily C member 2ENSG0000016600670
KCNA4 / P22459 / potassium voltage-gated channel subfamily A member 4ENSG0000018225531
KCNA2 / P16389 / potassium voltage-gated channel subfamily A member 2ENSG0000017730130
KCNA5 / P22460 / potassium voltage-gated channel subfamily A member 5ENSG0000013003730
KCNA3 / P22001 / potassium voltage-gated channel subfamily A member 3ENSG0000017727230
KCNA7 / Q96RP8 / potassium voltage-gated channel subfamily A member 7ENSG0000010484830
KCNA1 / Q09470 / potassium voltage-gated channel subfamily A member 1ENSG0000011126230
KCND2 / Q9NZV8 / potassium voltage-gated channel subfamily D member 2ENSG0000018440829
KCNA6 / P17658 / potassium voltage-gated channel subfamily A member 6ENSG0000015107929
KCND3 / Q9UK17 / potassium voltage-gated channel subfamily D member 3ENSG0000017138529
KCND1 / Q9NSA2 / potassium voltage-gated channel subfamily D member 1ENSG0000010205728
KCNA10 / Q16322 / potassium voltage-gated channel subfamily A member 10ENSG0000014310528


Protein motifs (from Interpro)
Interpro ID Name
 IPR000210  BTB/POZ domain
 IPR003131  Potassium channel tetramerisation-type BTB domain
 IPR003968  Potassium channel, voltage dependent, Kv
 IPR003974  Potassium channel, voltage dependent, Kv3
 IPR005403  Potassium channel, voltage dependent, Kv3.1
 IPR005821  Ion transport domain
 IPR011333  SKP1/BTB/POZ domain superfamily
 IPR028325  Voltage-gated potassium channel


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006813 potassium ion transport IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0009636 response to toxic substance IEA
 biological_processGO:0009642 response to light intensity IEA
 biological_processGO:0010996 response to auditory stimulus IEA
 biological_processGO:0014075 response to amine IEA
 biological_processGO:0021549 cerebellum development IEA
 biological_processGO:0021759 globus pallidus development IEA
 biological_processGO:0034765 regulation of ion transmembrane transport IEA
 biological_processGO:0034767 positive regulation of ion transmembrane transport IEA
 biological_processGO:0035690 cellular response to drug IEA
 biological_processGO:0035864 response to potassium ion IEA
 biological_processGO:0051260 protein homooligomerization IEA
 biological_processGO:0051262 protein tetramerization IDA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0071774 response to fibroblast growth factor IEA
 biological_processGO:0071805 potassium ion transmembrane transport IEA
 biological_processGO:1901379 regulation of potassium ion transmembrane transport IEA
 biological_processGO:1901381 positive regulation of potassium ion transmembrane transport IEA
 biological_processGO:1903818 positive regulation of voltage-gated potassium channel activity IEA
 biological_processGO:1990089 response to nerve growth factor IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0008076 voltage-gated potassium channel complex IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0030673 axolemma IEA
 cellular_componentGO:0032589 neuron projection membrane IEA
 cellular_componentGO:0032590 dendrite membrane IEA
 cellular_componentGO:0032809 neuronal cell body membrane IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005244 voltage-gated ion channel activity IEA
 molecular_functionGO:0005249 voltage-gated potassium channel activity IEA
 molecular_functionGO:0005251 delayed rectifier potassium channel activity IEA
 molecular_functionGO:0005267 potassium channel activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0019894 kinesin binding IEA
 molecular_functionGO:0044325 ion channel binding IEA


Pathways (from Reactome)
Pathway description
Voltage gated Potassium channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001268 Mental deterioration 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0003676 Progressive disorder 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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