ENSG00000131398


Homo sapiens

Features
Gene ID: ENSG00000131398
  
Biological name :KCNC3
  
Synonyms : KCNC3 / potassium voltage-gated channel subfamily C member 3 / Q14003
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: q13.33
Gene start: 50311937
Gene end: 50333515
  
Corresponding Affymetrix probe sets: 207600_at (Human Genome U133 Plus 2.0 Array)   230531_at (Human Genome U133 Plus 2.0 Array)   243893_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000432438
Ensembl peptide - ENSP00000434241
Ensembl peptide - ENSP00000366158
NCBI entrez gene - 3748     See in Manteia.
OMIM - 176264
RefSeq - XM_011526928
RefSeq - NM_004977
RefSeq - XM_006723203
RefSeq - XM_011526925
RefSeq - XM_011526926
RefSeq Peptide - NP_004968
swissprot - E9PQY4
swissprot - E7ETH1
swissprot - Q14003
Ensembl - ENSG00000131398
  
Related genetic diseases (OMIM): 605259 - Spinocerebellar ataxia 13, 605259
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 kcnc3aENSDARG00000055855Danio rerio
 kcnc3bENSDARG00000098816Danio rerio
 Kcnc3ENSMUSG00000062785Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
KCNC1 / P48547 / potassium voltage-gated channel subfamily C member 1ENSG0000012915956
KCNC4 / Q03721 / potassium voltage-gated channel subfamily C member 4ENSG0000011639655
KCNC2 / Q96PR1 / potassium voltage-gated channel subfamily C member 2ENSG0000016600652
KCNA5 / P22460 / potassium voltage-gated channel subfamily A member 5ENSG0000013003725
KCNA1 / Q09470 / potassium voltage-gated channel subfamily A member 1ENSG0000011126224
KCNA2 / P16389 / potassium voltage-gated channel subfamily A member 2ENSG0000017730124
KCNA6 / P17658 / potassium voltage-gated channel subfamily A member 6ENSG0000015107924
KCNA4 / P22459 / potassium voltage-gated channel subfamily A member 4ENSG0000018225524
KCNA7 / Q96RP8 / potassium voltage-gated channel subfamily A member 7ENSG0000010484824
KCNA3 / P22001 / potassium voltage-gated channel subfamily A member 3ENSG0000017727224
KCND3 / Q9UK17 / potassium voltage-gated channel subfamily D member 3ENSG0000017138523
KCND1 / Q9NSA2 / potassium voltage-gated channel subfamily D member 1ENSG0000010205723
KCNA10 / Q16322 / potassium voltage-gated channel subfamily A member 10ENSG0000014310522
KCND2 / Q9NZV8 / potassium voltage-gated channel subfamily D member 2ENSG0000018440822


Protein motifs (from Interpro)
Interpro ID Name
 IPR000210  BTB/POZ domain
 IPR003131  Potassium channel tetramerisation-type BTB domain
 IPR003968  Potassium channel, voltage dependent, Kv
 IPR003974  Potassium channel, voltage dependent, Kv3
 IPR005404  Potassium channel, voltage dependent, Kv3.3
 IPR005821  Ion transport domain
 IPR011333  SKP1/BTB/POZ domain superfamily
 IPR021105  Potassium channel, voltage dependent, Kv3, inactivation domain
 IPR028325  Voltage-gated potassium channel


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006813 potassium ion transport IEA
 biological_processGO:0034765 regulation of ion transmembrane transport IEA
 biological_processGO:0051260 protein homooligomerization IEA
 biological_processGO:0051262 protein tetramerization IDA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0071805 potassium ion transmembrane transport IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005938 cell cortex IEA
 cellular_componentGO:0008076 voltage-gated potassium channel complex IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0032591 dendritic spine membrane IEA
 cellular_componentGO:0042734 presynaptic membrane IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043204 perikaryon IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005244 voltage-gated ion channel activity IEA
 molecular_functionGO:0005249 voltage-gated potassium channel activity IMP
 molecular_functionGO:0005267 potassium channel activity IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Voltage gated Potassium channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000012 Urinary urgency 
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 HP:0000020 Urinary incontinence "Loss of the ability to control the urinary bladder leading to involuntary urination." [HPO:sdoelken]
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 HP:0000365 Hearing loss 
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 HP:0000473 Torticollis 
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 HP:0000543 Pale optic disks 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001999 Facial dysmorphism 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002062 Abnormality of the pyramidal tracts "An abnormality of the pyramidal system of motor neurons, whose chief element, the corticospinal tract, is the only direct connection between the brain and the spinal cord. In addition to the corticospinal tract, the pyramidal system includes the corticobulbar, corticomesencephalic, and corticopontine tracts." [HPO:curators]
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002067 Bradykinesia "Bradykinesia literally means slow movement, and is used clinically to denote a slowness in the execution of movement (in contrast to hypokinesia, which is used to refer to slowness in the initiation of movement)." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002073 Progressive cerebellar ataxia 
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 HP:0002172 Postural instability 
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 HP:0002312 Clumsiness 
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 HP:0002355 Difficulty walking 
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 HP:0002406 Limb dysmetria 
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 HP:0003677 Slow progression 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0006801 Hyperactive deep tendon reflexes 
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 HP:0006886 Decreased distal vibration sense "A decrease in the ability to perceive vibration in the distal portions of the limbs." [HPO:curators]
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 HP:0007256 Mild pyramidal signs 
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 HP:0008003 Jerky ocular pursuit movements 
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 HP:0009046 Difficulty walking, running, climbing stairs 
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 HP:0010794 Impaired visuospatial constructive cognition "Reduced ability affecting mainly the visuospatial cognition which may be tested using pattern construction (for example by Differential Ability Scales (DAS), which test a person s strengths and weaknesses across a range of intellectual abilities). Impaired visuospatial constructive cognition is one of the characteristic featrues of most patients with Willimas-Beuren Syndrome." [HPO:sdoelken]
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 HP:0025331 Upgaze palsy "A limitation of the ability to direct one s gaze above the horizontal meridian." []
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 HP:0030187 Titubation "Nodding movement of the head or body." [HPO:probinson, pmid:4821687]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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