ENSG00000130816


Homo sapiens

Features
Gene ID: ENSG00000130816
  
Biological name :DNMT1
  
Synonyms : DNA methyltransferase 1 / DNMT1 / P26358
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: p13.2
Gene start: 10133345
Gene end: 10231286
  
Corresponding Affymetrix probe sets: 201697_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000466657
Ensembl peptide - ENSP00000467125
Ensembl peptide - ENSP00000467260
Ensembl peptide - ENSP00000468062
Ensembl peptide - ENSP00000468359
Ensembl peptide - ENSP00000345739
Ensembl peptide - ENSP00000352516
Ensembl peptide - ENSP00000464958
Ensembl peptide - ENSP00000465223
Ensembl peptide - ENSP00000465555
Ensembl peptide - ENSP00000465993
Ensembl peptide - ENSP00000467050
NCBI entrez gene - 1786     See in Manteia.
OMIM - 126375
RefSeq - NM_001318731
RefSeq - NM_001379
RefSeq - NM_001130823
RefSeq - NM_001318730
RefSeq Peptide - NP_001305660
RefSeq Peptide - NP_001370
RefSeq Peptide - NP_001305659
RefSeq Peptide - NP_001124295
swissprot - P26358
swissprot - K7EIZ6
swissprot - K7EJL0
swissprot - K7EKC3
swissprot - K7ELB1
swissprot - K7EMU8
swissprot - K7ENQ6
swissprot - K7ENW7
swissprot - K7EP77
swissprot - K7ER10
swissprot - K7ERQ1
Ensembl - ENSG00000130816
  
Related genetic diseases (OMIM): 604121 - Cerebellar ataxia, deafness, and narcolepsy, autosomal dominant, 604121
  614116 - Neuropathy, hereditary sensory, type IE, 614116

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dnmt1ENSDARG00000030756Danio rerio
 Dnmt1ENSMUSG00000004099Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001025  Bromo adjacent homology (BAH) domain
 IPR001525  C-5 cytosine methyltransferase
 IPR002857  Zinc finger, CXXC-type
 IPR010506  DMAP1-binding domain
 IPR017198  DNA (cytosine-5)-methyltransferase 1-like
 IPR018117  DNA methylase, C-5 cytosine-specific, active site
 IPR022702  DNA (cytosine-5)-methyltransferase 1, replication foci domain
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase
 IPR031303  DNA methylase, C-5 cytosine-specific, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006306 DNA methylation IEA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007265 Ras protein signal transduction IMP
 biological_processGO:0010216 maintenance of DNA methylation IDA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010628 positive regulation of gene expression IMP
 biological_processGO:0016458 gene silencing IEA
 biological_processGO:0032259 methylation IEA
 biological_processGO:0032776 DNA methylation on cytosine IEA
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0043045 DNA methylation involved in embryo development IEA
 biological_processGO:0045814 negative regulation of gene expression, epigenetic TAS
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0051571 positive regulation of histone H3-K4 methylation IMP
 biological_processGO:0051573 negative regulation of histone H3-K9 methylation IMP
 biological_processGO:0071230 cellular response to amino acid stimulus IEA
 biological_processGO:0090116 C-5 methylation of cytosine IEA
 biological_processGO:0090309 positive regulation of methylation-dependent chromatin silencing IMP
 cellular_componentGO:0000792 heterochromatin IEA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005657 replication fork IEA
 cellular_componentGO:0005721 pericentric heterochromatin IEA
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003886 DNA (cytosine-5-)-methyltransferase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0008327 methyl-CpG binding IEA
 molecular_functionGO:0009008 DNA-methyltransferase activity TAS
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:1990841 promoter-specific chromatin binding IDA


Pathways (from Reactome)
Pathway description
PRC2 methylates histones and DNA
NoRC negatively regulates rRNA expression
SUMOylation of DNA methylation proteins
DNA methylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000020 Urinary incontinence "Loss of the ability to control the urinary bladder leading to involuntary urination." [HPO:sdoelken]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0000737 Irritability 
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 HP:0000741 Apathy 
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 HP:0000763 Sensory neuropathy "Peripheral neuropathy affecting primarily the sensory nerves." [HPO:curators]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001262 Somnolence 
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 HP:0001265 Hyporeflexia 
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 HP:0001268 Mental deterioration 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002189 Excessive daytime sleepiness 
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 HP:0002200 Pseudobulbar signs "Pseudobulbar signs result from injury to an upper motor neuron lesion to the corticobulbar pathways in the pyramidal tract. Patients have difficulty chewing, swallowing and demonstrate slurred speach (often initial presentation) as well as abnormal behavioral symptoms such as inappropriate emotional outbursts of uncontrolled laughter or weeping etc." [HPO:sdoelken]
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 HP:0002322 Resting tremor "A resting tremor occurs when muscles are at rest and becomes less noticeable or disappears when the affected muscles are moved. Resting tremors are often slow and coarse." [HPO:curators]
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 HP:0002346 Head tremor 
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 HP:0002354 Memory impairment 
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 HP:0002476 Primitive reflexes (palmomental, snout, glabellar) 
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 HP:0002500 Abnormality of the cerebral white matter 
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 HP:0002524 Cataplexy 
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 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
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 HP:0002754 Osteomyelitis 
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 HP:0002921 Abnormal CSF findings 
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 HP:0003287 Abnormality of mitochondrial metabolism 
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 HP:0003380 Decreased number of myelinated fibers "A loss of myelinated nerve fibers (in general, this finding can be observed on nerve biopsy)." [HPO:curators]
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003550 Lymphedema, predominantly in the lower limbs 
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 HP:0003581 Onset in adulthood 
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 HP:0003676 Progressive disorder 
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 HP:0007082 Enlarged lateral and third ventricles 
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 HP:0007366 Atrophy/Degeneration affecting the brainstem 
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 HP:0030050 Narcolepsy "An abnormal phenomenon characterized by a classic tetrad of excessive daytime sleepiness with irresistible sleep attacks, cataplexy (sudden bilateral loss of muscle tone), hypnagogic hallucination, and sleep paralysis." []
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 HP:0100710 Impulsivity 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000132475 H3F3B / P84243 / H3 histone family member 3B  / reaction / complex
 ENSG00000074266 EED / O75530 / embryonic ectoderm development  / complex / reaction
 ENSG00000178691 SUZ12 / Q15022 / SUZ12 polycomb repressive complex 2 subunit  / reaction / complex
 ENSG00000183598 Q71DI3 / HIST2H3D / histone cluster 2 H3 family member d  / complex / reaction
 ENSG00000275714 P68431 / HIST1H3A / histone cluster 1 H3 family member a  / reaction / complex
 ENSG00000276043 UHRF1 / Q96T88 / ubiquitin like with PHD and ring finger domains 1  / reaction / complex
 ENSG00000116030 SUMO1 / P63165 / small ubiquitin-like modifier 1  / complex / reaction
 ENSG00000103275 UBE2I / P63279 / ubiquitin conjugating enzyme E2 I  / reaction
 ENSG00000276180 P62805 / HIST1H4I / histone cluster 1 H4 family member i  / reaction / complex
 ENSG00000106462 EZH2 / Q15910 / enhancer of zeste 2 polycomb repressive complex 2 subunit  / reaction / complex
 ENSG00000102054 RBBP7 / Q16576 / RB binding protein 7, chromatin remodeling factor  / complex / reaction
 ENSG00000162521 RBBP4 / Q09028 / RB binding protein 4, chromatin remodeling factor  / complex / reaction






 

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