ENSG00000178691


Homo sapiens

Features
Gene ID: ENSG00000178691
  
Biological name :SUZ12
  
Synonyms : Q15022 / SUZ12 / SUZ12 polycomb repressive complex 2 subunit
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q11.2
Gene start: 31937018
Gene end: 32001045
  
Corresponding Affymetrix probe sets: 1566190_at (Human Genome U133 Plus 2.0 Array)   1566191_at (Human Genome U133 Plus 2.0 Array)   212287_at (Human Genome U133 Plus 2.0 Array)   213971_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000316578
Ensembl peptide - ENSP00000463936
NCBI entrez gene - 23512     See in Manteia.
OMIM - 606245
RefSeq - XM_017024409
RefSeq - NM_001321207
RefSeq - NM_015355
RefSeq - XM_006721794
RefSeq Peptide - NP_056170
RefSeq Peptide - NP_001308136
swissprot - Q15022
swissprot - J3QQW9
Ensembl - ENSG00000178691
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 B0R1D5ENSDARG00000098924Danio rerio
 suz12aENSDARG00000070256Danio rerio
 SUZ12ENSGALG00000003277Gallus gallus
 Suz12ENSMUSG00000017548Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019135  Polycomb protein, VEFS-Box


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0016571 histone methylation IEA
 biological_processGO:0016574 histone ubiquitination IEA
 biological_processGO:0045596 negative regulation of cell differentiation IMP
 biological_processGO:0045814 negative regulation of gene expression, epigenetic TAS
 biological_processGO:0070317 negative regulation of G0 to G1 transition TAS
 biological_processGO:0070734 histone H3-K27 methylation IEA
 cellular_componentGO:0001739 sex chromatin IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0016586 RSC-type complex IBA
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0032993 protein-DNA complex IEA
 cellular_componentGO:0035098 ESC/E(Z) complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0031490 chromatin DNA binding IEA
 molecular_functionGO:0035064 methylated histone binding IDA
 molecular_functionGO:0042054 histone methyltransferase activity IMP
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046976 histone methyltransferase activity (H3-K27 specific) IMP
 molecular_functionGO:1990841 promoter-specific chromatin binding IEA


Pathways (from Reactome)
Pathway description
PRC2 methylates histones and DNA
Oxidative Stress Induced Senescence
PKMTs methylate histone lysines
SUMOylation of chromatin organization proteins
Activation of anterior HOX genes in hindbrain development during early embryogenesis
Regulation of PTEN gene transcription
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000023 Inguinal hernia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000098 Increased body height 
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000278 Retrognathia 
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 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000400 Large ears 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0001176 Large hands 
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001582 Loose, redundant skin 
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 HP:0001609 Hoarse voice 
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 HP:0001761 Pes cavus 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001769 Broad feet "Increased width of the feet." [HPO:curators]
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 HP:0001800 Hypoplastic toenails "Underdeveloped toenails." [HPO:curators]
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 HP:0001814 Thin, deep-set nails 
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 HP:0001816 Thin nails 
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 HP:0001852 Gap between first and second toes "The presence of a larger than normal gap between the first and second toes related to medial displacement of the first toe." [HPO:curators]
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 HP:0002002 Deep philtrum 
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 HP:0002213 Fine hair 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0005616 Accelerated skeletal maturation "An abnormally increased rate of skeletal maturation. Accelerated skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0005692 Joint hyperflexibility 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0008736 Hypoplasia of penis 
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 HP:0008872 Feeding problems in infancy 
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 HP:0010300 Abnormally low-pitched voice "An abnormally low-pitched voice." [HPO:curators]
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 HP:0011304 Broad thumb "Increased thumb width without increased dorso-ventral dimension." [pmid:19125433]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000120616 EPC1 / Q9H2F5 / enhancer of polycomb homolog 1  / complex / reaction
 ENSG00000102974 CTCF / P49711 / CCCTC-binding factor  / complex
 ENSG00000132475 H3F3B / P84243 / H3 histone family member 3B  / complex / reaction
 ENSG00000169016 E2F6 / O75461 / E2F transcription factor 6  / complex / reaction
 ENSG00000119403 PHF19 / Q5T6S3 / PHD finger protein 19  / complex
 ENSG00000119772 DNMT3A / Q9Y6K1 / DNA methyltransferase 3 alpha  / complex / reaction
 ENSG00000130816 DNMT1 / P26358 / DNA methyltransferase 1  / reaction / complex
 ENSG00000116030 SUMO1 / P63165 / small ubiquitin-like modifier 1  / reaction / complex
 ENSG00000106462 EZH2 / Q15910 / enhancer of zeste 2 polycomb repressive complex 2 subunit  / complex
 ENSG00000074266 EED / O75530 / embryonic ectoderm development  / complex
 ENSG00000162521 RBBP4 / Q09028 / RB binding protein 4, chromatin remodeling factor  / complex
 ENSG00000139154 AEBP2 / Q6ZN18 / AE binding protein 2  / complex
 ENSG00000143033 MTF2 / Q9Y483 / metal response element binding transcription factor 2  / complex
 ENSG00000183598 Q71DI3 / HIST2H3D / histone cluster 2 H3 family member d  / reaction / complex
 ENSG00000275714 P68431 / HIST1H3A / histone cluster 1 H3 family member a  / reaction / complex
 ENSG00000088305 DNMT3B / Q9UBC3 / DNA methyltransferase 3 beta  / complex / reaction
 ENSG00000103275 UBE2I / P63279 / ubiquitin conjugating enzyme E2 I  / reaction
 ENSG00000102054 RBBP7 / Q16576 / RB binding protein 7, chromatin remodeling factor  / complex
 ENSG00000276180 P62805 / HIST1H4I / histone cluster 1 H4 family member i  / reaction / complex
 ENSG00000008083 JARID2 / Q92833 / jumonji and AT-rich interaction domain containing 2  / complex
 ENSG00000112511 PHF1 / O43189 / PHD finger protein 1  / complex
 ENSG00000198176 TFDP1 / Q14186 / transcription factor Dp-1  / complex / reaction






 

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