ENSG00000106462


Homo sapiens

Features
Gene ID: ENSG00000106462
  
Biological name :EZH2
  
Synonyms : enhancer of zeste 2 polycomb repressive complex 2 subunit / EZH2 / Q15910
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q36.1
Gene start: 148807383
Gene end: 148884321
  
Corresponding Affymetrix probe sets: 203358_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000419050
Ensembl peptide - ENSP00000417704
Ensembl peptide - ENSP00000419711
Ensembl peptide - ENSP00000419856
Ensembl peptide - ENSP00000223193
Ensembl peptide - ENSP00000320147
Ensembl peptide - ENSP00000417062
Ensembl peptide - ENSP00000417377
NCBI entrez gene - 2146     See in Manteia.
OMIM - 601573
RefSeq - XM_017011821
RefSeq - XM_011515893
RefSeq - XM_011515894
RefSeq - XM_011515895
RefSeq - XM_011515896
RefSeq - XM_011515897
RefSeq - XM_011515898
RefSeq - XM_017011817
RefSeq - XM_017011818
RefSeq - XM_017011819
RefSeq - XM_017011820
RefSeq - NM_001203247
RefSeq - NM_001203248
RefSeq - NM_001203249
RefSeq - NM_004456
RefSeq - NM_152998
RefSeq - XM_005249962
RefSeq - XM_005249963
RefSeq - XM_005249964
RefSeq - XM_011515883
RefSeq - XM_011515884
RefSeq - XM_011515885
RefSeq - XM_011515886
RefSeq - XM_011515887
RefSeq - XM_011515888
RefSeq - XM_011515889
RefSeq - XM_011515890
RefSeq - XM_011515891
RefSeq - XM_011515892
RefSeq Peptide - NP_694543
RefSeq Peptide - NP_004447
RefSeq Peptide - NP_001190176
RefSeq Peptide - NP_001190177
RefSeq Peptide - NP_001190178
swissprot - S4S3R8
swissprot - G3XAL2
swissprot - Q15910
swissprot - E9PDH6
swissprot - A0A090N8E9
Ensembl - ENSG00000106462
  
Related genetic diseases (OMIM): 277590 - Weaver syndrome, 277590
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ezh2ENSDARG00000010571Danio rerio
 EZH2ENSGALG00000043399Gallus gallus
 Ezh2ENSMUSG00000029687Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
EZH1 / Q92800 / enhancer of zeste 1 polycomb repressive complex 2 subunitENSG0000010879965
EHMT2 / Q96KQ7 / euchromatic histone lysine methyltransferase 2ENSG0000020437117
EHMT1 / Q9H9B1 / euchromatic histone lysine methyltransferase 1ENSG0000018109017
NSD3 / Q9BZ95 / nuclear receptor binding SET domain protein 3ENSG0000014754816
NSD1 / Q96L73 / nuclear receptor binding SET domain protein 1ENSG0000016567116
ASH1L / Q9NR48 / ASH1 like histone lysine methyltransferaseENSG0000011653915
NSD2 / O96028 / nuclear receptor binding SET domain protein 2ENSG0000010968515
Q15047 / SETDB1 / SET domain bifurcated 1ENSG0000014337914
SETD2 / Q9BYW2 / SET domain containing 2ENSG0000018155514
O43463 / SUV39H1 / suppressor of variegation 3-9 homolog 1ENSG0000010194511
Q9H5I1 / SUV39H2 / suppressor of variegation 3-9 homolog 2ENSG0000015245511
Q9Y6X0 / SETBP1 / SET binding protein 1ENSG0000015221711
Q96T68 / SETDB2 / SET domain bifurcated 2ENSG0000013616910
Q53H47 / SETMAR / SET domain and mariner transposase fusion geneENSG000001703648


Protein motifs (from Interpro)
Interpro ID Name
 IPR001005  SANT/Myb domain
 IPR001214  SET domain
 IPR021654  Histone-lysine N-methyltransferase EZH1/EZH2
 IPR026489  CXC domain
 IPR033467  Tesmin/TSO1-like CXC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0001932 regulation of protein phosphorylation IEA
 biological_processGO:0006306 DNA methylation IEA
 biological_processGO:0006325 chromatin organization TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated TAS
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010629 negative regulation of gene expression IEA
 biological_processGO:0010718 positive regulation of epithelial to mesenchymal transition IDA
 biological_processGO:0014013 regulation of gliogenesis IEA
 biological_processGO:0014834 skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration IEA
 biological_processGO:0014898 cardiac muscle hypertrophy in response to stress IEA
 biological_processGO:0016571 histone methylation IMP
 biological_processGO:0021695 cerebellar cortex development IEA
 biological_processGO:0021766 hippocampus development IEA
 biological_processGO:0032259 methylation IEA
 biological_processGO:0032355 response to estradiol IEA
 biological_processGO:0034244 negative regulation of transcription elongation from RNA polymerase II promoter IEA
 biological_processGO:0034968 histone lysine methylation IEA
 biological_processGO:0035984 cellular response to trichostatin A IEA
 biological_processGO:0036333 hepatocyte homeostasis IEA
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0042752 regulation of circadian rhythm IMP
 biological_processGO:0043406 positive regulation of MAP kinase activity IDA
 biological_processGO:0043433 negative regulation of DNA-binding transcription factor activity IEA
 biological_processGO:0043547 positive regulation of GTPase activity IDA
 biological_processGO:0045605 negative regulation of epidermal cell differentiation IEA
 biological_processGO:0045814 negative regulation of gene expression, epigenetic TAS
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IMP
 biological_processGO:0048387 negative regulation of retinoic acid receptor signaling pathway IMP
 biological_processGO:0048511 rhythmic process IEA
 biological_processGO:0050767 regulation of neurogenesis IEA
 biological_processGO:0051154 negative regulation of striated muscle cell differentiation IEA
 biological_processGO:0070301 cellular response to hydrogen peroxide IEA
 biological_processGO:0070314 G1 to G0 transition IEA
 biological_processGO:0070317 negative regulation of G0 to G1 transition TAS
 biological_processGO:0070734 histone H3-K27 methylation IDA
 biological_processGO:0071168 protein localization to chromatin IEA
 biological_processGO:0071902 positive regulation of protein serine/threonine kinase activity IDA
 biological_processGO:0097421 liver regeneration IEA
 biological_processGO:0098532 histone H3-K27 trimethylation IEA
 biological_processGO:1900006 positive regulation of dendrite development IEA
 biological_processGO:1904772 response to tetrachloromethane IEA
 biological_processGO:2000134 negative regulation of G1/S transition of mitotic cell cycle IEA
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0035098 ESC/E(Z) complex IDA
 cellular_componentGO:0045120 pronucleus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001047 core promoter binding ISS
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016279 protein-lysine N-methyltransferase activity TAS
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0018024 histone-lysine N-methyltransferase activity IEA
 molecular_functionGO:0031490 chromatin DNA binding IDA
 molecular_functionGO:0042054 histone methyltransferase activity IDA
 molecular_functionGO:0043021 ribonucleoprotein complex binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:0046976 histone methyltransferase activity (H3-K27 specific) TAS
 molecular_functionGO:0070878 primary miRNA binding IEA
 molecular_functionGO:1990841 promoter-specific chromatin binding IDA


Pathways (from Reactome)
Pathway description
PRC2 methylates histones and DNA
Oxidative Stress Induced Senescence
PKMTs methylate histone lysines
Activation of anterior HOX genes in hindbrain development during early embryogenesis
Regulation of PTEN gene transcription
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000034 Hydrocele 
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 HP:0000098 Increased body height 
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000278 Retrognathia 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000400 Large ears 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000708 Behavioural/Psychiatric Abnormality 
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 HP:0000750 Impaired language development 
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 HP:0000773 Short ribs 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0000973 Cutis laxa 
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 HP:0001176 Large hands 
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 HP:0001212 Prominent fingertip pads "A soft tissue prominence of the ventral aspects of the fingertips. The term "persistent fetal fingertip pads" is often used as a synonym, but should better not be used because it implies knowledge of history of the patient which often does not exist." [HPO:curators]
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001331 Absent septum pellucidum "Absence of the septum pellucidum." [HPO:curators]
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 HP:0001350 Slurred speech 
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 HP:0001377 Limited elbow extension 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001540 Diastasis recti 
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 HP:0001582 Loose, redundant skin 
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 HP:0001609 Hoarse voice 
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 HP:0001761 Pes cavus 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001769 Broad feet "Increased width of the feet." [HPO:curators]
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 HP:0001800 Hypoplastic toenails "Underdeveloped toenails." [HPO:curators]
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 HP:0001814 Thin, deep-set nails 
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 HP:0001816 Thin nails 
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 HP:0001840 Metatarsus varus "Metatarsus varus (adductus) is one of the most common foot deformities, that is defined as a transverse plane deformity in Lisfranc s (tarsometatarsal) joints in which the metatarsals are deviated medially. The relationship between talus and calcaneus is normal. On inspection the toes angle abruptly towards the midline, creating a C-shaped lateral foot border with a prominent styloid process of the 5th metatarsal. The result is that the forefoot is twisted inwards relative to the heel, so that the sole faces the midline." [HPO:curators]
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 HP:0001845 Overriding toes "A congenital condition in which a toe is adducted, dorsifelxed, and medially deviated, generally lying over the metatarsal phalangeal joint of the adjacent toe. Usually, the fifth toe is affected." [HPO:curators]
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 HP:0001848 Calcaneovalgus deformities 
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 HP:0001852 Gap between first and second toes "The presence of a larger than normal gap between the first and second toes related to medial displacement of the first toe." [HPO:curators]
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 HP:0002002 Deep philtrum 
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 HP:0002213 Fine hair 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002673 Coxa valga "Coxa valga is a deformity of the hip in which the angle between the femoral shaft and the femoral neck is increased compared to age-adjusted values (about 150 degrees in newborns gradually reducing to 120-130 degrees in adults)." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002834 Flared femurs and humeri 
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 HP:0002866 Hypoplastic iliac wings 
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 HP:0003066 Limited knee extension 
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 HP:0003186 Inverted nipples "The presence of nipples that instead of pointing outward are retracted inwards." [HPO:sdoelken]
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 HP:0003911 Flared humeral metaphyses 
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 HP:0004689 short fourth metatarsals 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005616 Accelerated skeletal maturation "An abnormally increased rate of skeletal maturation. Accelerated skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0005692 Joint hyperflexibility 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006956 Dilation of lateral ventricles 
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 HP:0008070 Sparse hair 
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 HP:0008736 Hypoplasia of penis 
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 HP:0008872 Feeding problems in infancy 
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 HP:0009466 Radial deviation of fingers 
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0010300 Abnormally low-pitched voice "An abnormally low-pitched voice." [HPO:curators]
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 HP:0010751 Chin dimple "A persistent midline depression of the skin over the fat pad of the chin." [pmid:19125436]
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 HP:0011304 Broad thumb "Increased thumb width without increased dorso-ventral dimension." [pmid:19125433]
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 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0200000 Dysharmonic bone age 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000120616 EPC1 / Q9H2F5 / enhancer of polycomb homolog 1  / reaction / complex
 ENSG00000102974 CTCF / P49711 / CCCTC-binding factor  / complex
 ENSG00000132475 H3F3B / P84243 / H3 histone family member 3B  / complex / reaction
 ENSG00000169016 E2F6 / O75461 / E2F transcription factor 6  / reaction / complex
 ENSG00000119403 PHF19 / Q5T6S3 / PHD finger protein 19  / complex
 ENSG00000178691 SUZ12 / Q15022 / SUZ12 polycomb repressive complex 2 subunit  / complex
 ENSG00000088305 DNMT3B / Q9UBC3 / DNA methyltransferase 3 beta  / reaction / complex
 ENSG00000275714 P68431 / HIST1H3A / histone cluster 1 H3 family member a  / reaction / complex
 ENSG00000130816 DNMT1 / P26358 / DNA methyltransferase 1  / reaction / complex
 ENSG00000276180 P62805 / HIST1H4I / histone cluster 1 H4 family member i  / reaction / complex
 ENSG00000119772 DNMT3A / Q9Y6K1 / DNA methyltransferase 3 alpha  / reaction / complex
 ENSG00000183598 Q71DI3 / HIST2H3D / histone cluster 2 H3 family member d  / reaction / complex
 ENSG00000074266 EED / O75530 / embryonic ectoderm development  / complex
 ENSG00000139154 AEBP2 / Q6ZN18 / AE binding protein 2  / complex
 ENSG00000143033 MTF2 / Q9Y483 / metal response element binding transcription factor 2  / complex
 ENSG00000102054 RBBP7 / Q16576 / RB binding protein 7, chromatin remodeling factor  / complex
 ENSG00000008083 JARID2 / Q92833 / jumonji and AT-rich interaction domain containing 2  / complex
 ENSG00000112511 PHF1 / O43189 / PHD finger protein 1  / complex
 ENSG00000162521 RBBP4 / Q09028 / RB binding protein 4, chromatin remodeling factor  / complex
 ENSG00000198176 TFDP1 / Q14186 / transcription factor Dp-1  / complex / reaction






 

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