ENSG00000181090


Homo sapiens

Features
Gene ID: ENSG00000181090
  
Biological name :EHMT1
  
Synonyms : EHMT1 / euchromatic histone lysine methyltransferase 1 / Q9H9B1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: q34.3
Gene start: 137618963
Gene end: 137870016
  
Corresponding Affymetrix probe sets: 1559311_at (Human Genome U133 Plus 2.0 Array)   219339_s_at (Human Genome U133 Plus 2.0 Array)   222873_s_at (Human Genome U133 Plus 2.0 Array)   225461_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000485878
Ensembl peptide - ENSP00000436107
Ensembl peptide - ENSP00000485900
Ensembl peptide - ENSP00000491823
Ensembl peptide - ENSP00000490907
Ensembl peptide - ENSP00000490815
Ensembl peptide - ENSP00000490732
Ensembl peptide - ENSP00000490714
Ensembl peptide - ENSP00000490611
Ensembl peptide - ENSP00000490417
Ensembl peptide - ENSP00000490328
Ensembl peptide - ENSP00000490056
Ensembl peptide - ENSP00000489961
Ensembl peptide - ENSP00000489786
Ensembl peptide - ENSP00000486969
Ensembl peptide - ENSP00000486857
Ensembl peptide - ENSP00000486748
Ensembl peptide - ENSP00000486580
Ensembl peptide - ENSP00000486503
Ensembl peptide - ENSP00000486261
Ensembl peptide - ENSP00000486127
Ensembl peptide - ENSP00000485947
Ensembl peptide - ENSP00000485945
Ensembl peptide - ENSP00000485933
Ensembl peptide - ENSP00000417328
Ensembl peptide - ENSP00000417980
NCBI entrez gene - 79813     See in Manteia.
OMIM - 607001
RefSeq - XM_017015138
RefSeq - NM_001145527
RefSeq - NM_001354263
RefSeq - NM_001354611
RefSeq - NM_001354612
RefSeq - NM_024757
RefSeq - XM_005266105
RefSeq - XM_005266110
RefSeq - XM_006717288
RefSeq - XM_011519021
RefSeq - XM_011519022
RefSeq - XM_011519023
RefSeq - XM_011519024
RefSeq - XM_011519025
RefSeq - XM_011519026
RefSeq - XM_011519027
RefSeq - XM_011519028
RefSeq - XM_011519029
RefSeq - XM_011519033
RefSeq - XM_017015134
RefSeq - XM_017015135
RefSeq - XM_017015136
RefSeq - XM_017015137
RefSeq Peptide - NP_001341541
RefSeq Peptide - NP_079033
RefSeq Peptide - NP_001138999
RefSeq Peptide - NP_001341192
RefSeq Peptide - NP_001341540
swissprot - A0A0D9SEP2
swissprot - A0A1W2PPZ7
swissprot - A0A1B0GWF6
swissprot - A0A1B0GW79
swissprot - A0A1B0GW12
swissprot - A0A1B0GVZ8
swissprot - A0A1B0GV89
swissprot - A0A1B0GV09
swissprot - A0A1B0GUD1
swissprot - A0A1B0GU48
swissprot - A0A1B0GTP4
swissprot - A0A0D9SFX4
swissprot - A0A0D9SFS4
swissprot - A0A0D9SFM6
swissprot - A0A0D9SFG7
swissprot - A0A0D9SFD7
swissprot - A0A0D9SF38
swissprot - A0A0D9SEY2
swissprot - A0A0D9SER9
swissprot - A0A0D9SER3
swissprot - Q9H9B1
swissprot - A0A0C4DGF8
swissprot - A0A0D9SEQ1
Ensembl - ENSG00000181090
  
Related genetic diseases (OMIM): 610253 - Kleefstra syndrome 1, 610253
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ehmt1aENSDARG00000068157Danio rerio
 ehmt1bENSDARG00000026634Danio rerio
 EHMT1ENSGALG00000033678Gallus gallus
 Ehmt1ENSMUSG00000036893Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
EHMT2 / Q96KQ7 / euchromatic histone lysine methyltransferase 2ENSG0000020437144
NSD2 / O96028 / nuclear receptor binding SET domain protein 2ENSG0000010968515
NSD1 / Q96L73 / nuclear receptor binding SET domain protein 1ENSG0000016567115
SETD2 / Q9BYW2 / SET domain containing 2ENSG0000018155514
NSD3 / Q9BZ95 / nuclear receptor binding SET domain protein 3ENSG0000014754814
Q15047 / SETDB1 / SET domain bifurcated 1ENSG0000014337913
ASH1L / Q9NR48 / ASH1 like histone lysine methyltransferaseENSG0000011653912
Q96T68 / SETDB2 / SET domain bifurcated 2ENSG0000013616910
EZH1 / Q92800 / enhancer of zeste 1 polycomb repressive complex 2 subunitENSG0000010879910
EZH2 / Q15910 / enhancer of zeste 2 polycomb repressive complex 2 subunitENSG0000010646210
Q9H5I1 / SUV39H2 / suppressor of variegation 3-9 homolog 2ENSG000001524559
O43463 / SUV39H1 / suppressor of variegation 3-9 homolog 1ENSG000001019459
Q9Y6X0 / SETBP1 / SET binding protein 1ENSG000001522179
Q53H47 / SETMAR / SET domain and mariner transposase fusion geneENSG000001703646


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR002110  Ankyrin repeat
 IPR007728  Pre-SET domain
 IPR020683  Ankyrin repeat-containing domain
 IPR036770  Ankyrin repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006306 DNA methylation ISS
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0009790 embryo development ISS
 biological_processGO:0016571 histone methylation IDA
 biological_processGO:0018026 peptidyl-lysine monomethylation ISS
 biological_processGO:0018027 peptidyl-lysine dimethylation IDA
 biological_processGO:0032259 methylation IEA
 biological_processGO:0034968 histone lysine methylation IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated ISS
 biological_processGO:0051567 histone H3-K9 methylation IEA
 biological_processGO:0060992 response to fungicide IEA
 biological_processGO:0070317 negative regulation of G0 to G1 transition TAS
 biological_processGO:0070734 histone H3-K27 methylation IEA
 biological_processGO:1901796 regulation of signal transduction by p53 class mediator TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016604 nuclear body IDA
 molecular_functionGO:0002039 p53 binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016279 protein-lysine N-methyltransferase activity IDA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0018024 histone-lysine N-methyltransferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046974 histone methyltransferase activity (H3-K9 specific) ISS
 molecular_functionGO:0046976 histone methyltransferase activity (H3-K27 specific) ISS
 molecular_functionGO:0070742 C2H2 zinc finger domain binding IEA


Pathways (from Reactome)
Pathway description
Senescence-Associated Secretory Phenotype (SASP)
PKMTs methylate histone lysines
Regulation of TP53 Activity through Methylation
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
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 HP:0000232 Everted lower lip 
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000280 Coarse facial features 
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000365 Hearing loss 
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 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000695 Neonatal teeth 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000717 Autism 
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000722 Obsessive-compulsive disorder 
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0000737 Irritability 
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 HP:0000739 Anxiety 
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 HP:0000741 Apathy 
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 HP:0000750 Impaired language development 
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 HP:0000954 Transverse palmar creases "The presence of a single palmar crease (instead of the two palmar creases that are typically present)." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001331 Absent septum pellucidum "Absence of the septum pellucidum." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001510 Growth retardation 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001650 Aortic stenosis "The presence of a stenosis (narrowing) of the aortic valve." [HPO:curators]
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 HP:0001659 Aortic insufficiency "An insufficiency of the aortic valve, leading to regurgitation (backward flow) of blood from the aorta into the left ventricle." [HPO:curators]
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 HP:0001671 Abnormality of the cardiac septa 
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 HP:0001680 Coarctation of aorta "Coarctation of the aorta is a narrowing or constriction of the aorta just distal to the origin of the left subclavian artery." [HPO:curators]
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 HP:0001710 Conotruncal defect 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002119 Ventriculomegaly 
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 HP:0002121 Absence seizures "Recurrent absence seizures are `generalized seizures` (HP:0002197) that are characterized by a sudden cessation of motor activity and by a blank facial expression with flickering of the eyelids. There is no convulsive muscular activity or loss of postural control." [HPO:probinson]
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 HP:0002133 Status epilepticus 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002300 Mutism 
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 HP:0002357 Dysphasia 
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 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
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 HP:0002381 Aphasia 
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 HP:0002553 Arched eyebrows 
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0002786 Tracheobronchomalacia 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003745 Sporadic 
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 HP:0005469 Occipital plagiocephaly "Occipital plagiocephaly can result from fusion or sclerosis of the lambdoid suture. If unilateral, this is accompanied by unilateral occipital flattening and bulging of the ispilateral frontal bone." [HPO:curators]
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 HP:0006335 Delayed loss of deciduous teeth 
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 HP:0008736 Hypoplasia of penis 
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 HP:0010529 Echolalia "The tendency to repeat vocalizations made by another person." [HPO:curators]
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 HP:0010806 U-Shaped upper lip vermilion "Gentle upward curve of the upper lip vermilion such that the center is placed well superior to the commissures." [pmid:19125428]
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 HP:0010808 Protruding tongue "Tongue extending beyond the alveolar ridges or teeth at rest." [pmid:19125428]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011097 Epileptic spasms "A sudden flexion, extension or mixed extension-flexion of predominantly proximal and truncal muscles which is usually more sustained than a myoclonic movement but not as sustained as a tonic seizure." [HPO:jalbers]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012157 Subcortical cerebral atrophy "Atrophy of the cerebral subcortical white and gray matter, termed subcortical atrophy, reflects loss of nerve cells in the basal ganglia or fibers in the deep white matter." [HPO:probinson, pmid:20813998]
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 HP:0012210 Abnormal renal morphology "Any structural anomaly of the `kidney` (FMA:7203)." [HPO:probinson]
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 HP:0012368 Flat face "Absence of concavity or convexity of the face when viewed in profile." [pmid:19125436]
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 HP:0100308 Cerebral cortical hemiatrophy 
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 HP:0100541 Femoral hernia "A hernia which occurs just below the inguinal ligament, where abdominal contents pass through a naturally occurring weakness called the femoral canal." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000100395 Q969R5 / L3MBTL2 / L3MBTL2, polycomb repressive complex 1 subunit  / reaction / complex
 ENSG00000105325 FZR1 / Q9UM11 / fizzy and cell division cycle 20 related 1  / complex / reaction
 ENSG00000156374 PCGF6 / Q9BYE7 / polycomb group ring finger 6  / reaction / complex
 ENSG00000015153 YAF2 / Q8IY57 / YY1 associated factor 2  / complex / reaction
 ENSG00000183598 Q71DI3 / HIST2H3D / histone cluster 2 H3 family member d  / reaction
 ENSG00000122565 CBX3 / Q13185 / chromobox 3  / reaction / complex
 ENSG00000204371 EHMT2 / Q96KQ7 / euchromatic histone lysine methyltransferase 2  / complex
 ENSG00000174197 MGA / Q8IWI9 / MGA, MAX dimerization protein  / reaction / complex
 ENSG00000125952 MAX / P61244 / MYC associated factor X  / reaction / complex
 ENSG00000275714 P68431 / HIST1H3A / histone cluster 1 H3 family member a  / reaction
 ENSG00000141510 TP53 / P04637 / tumor protein p53  / reaction
 ENSG00000276180 P62805 / HIST1H4I / histone cluster 1 H4 family member i  / reaction
 ENSG00000169016 E2F6 / O75461 / E2F transcription factor 6  / reaction / complex
 ENSG00000198176 TFDP1 / Q14186 / transcription factor Dp-1  / reaction / complex
 ENSG00000132475 H3F3B / P84243 / H3 histone family member 3B  / reaction
 ENSG00000121481 RNF2 / Q99496 / ring finger protein 2  / reaction / complex
 ENSG00000204227 RING1 / Q06587 / ring finger protein 1  / reaction / complex






 

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