ENSG00000181555


Homo sapiens

Features
Gene ID: ENSG00000181555
  
Biological name :SETD2
  
Synonyms : Q9BYW2 / SETD2 / SET domain containing 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: p21.31
Gene start: 47016429
Gene end: 47163967
  
Corresponding Affymetrix probe sets: 212493_s_at (Human Genome U133 Plus 2.0 Array)   215038_s_at (Human Genome U133 Plus 2.0 Array)   220946_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000411901
Ensembl peptide - ENSP00000388349
Ensembl peptide - ENSP00000416401
Ensembl peptide - ENSP00000491413
Ensembl peptide - ENSP00000332415
Ensembl peptide - ENSP00000386759
NCBI entrez gene - 29072     See in Manteia.
OMIM - 612778
RefSeq - XM_017006270
RefSeq - NM_001349370
RefSeq - NM_014159
RefSeq - XM_011533631
RefSeq - XM_011533632
RefSeq - XM_011533633
RefSeq - XM_011533634
RefSeq Peptide - NP_001336299
RefSeq Peptide - NP_054878
swissprot - C9JG86
swissprot - H7BXT4
swissprot - H7BZ93
swissprot - H7C3H4
swissprot - Q9BYW2
swissprot - A0A1W2PPX9
Ensembl - ENSG00000181555
  
Related genetic diseases (OMIM): 616831 - Luscan-Lumish syndrome, 616831
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 setd2ENSDARG00000062244Danio rerio
 SETD2ENSGALG00000042051Gallus gallus
 Setd2ENSMUSG00000044791Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ASH1L / Q9NR48 / ASH1 like histone lysine methyltransferaseENSG0000011653918
NSD1 / Q96L73 / nuclear receptor binding SET domain protein 1ENSG0000016567112
NSD3 / Q9BZ95 / nuclear receptor binding SET domain protein 3ENSG000001475489
NSD2 / O96028 / nuclear receptor binding SET domain protein 2ENSG000001096859
Q9Y6X0 / SETBP1 / SET binding protein 1ENSG000001522177
EHMT1 / Q9H9B1 / euchromatic histone lysine methyltransferase 1ENSG000001810907
EHMT2 / Q96KQ7 / euchromatic histone lysine methyltransferase 2ENSG000002043715
O43463 / SUV39H1 / suppressor of variegation 3-9 homolog 1ENSG000001019455
Q15047 / SETDB1 / SET domain bifurcated 1ENSG000001433795
Q9H5I1 / SUV39H2 / suppressor of variegation 3-9 homolog 2ENSG000001524554
EZH1 / Q92800 / enhancer of zeste 1 polycomb repressive complex 2 subunitENSG000001087994
Q96T68 / SETDB2 / SET domain bifurcated 2ENSG000001361694
EZH2 / Q15910 / enhancer of zeste 2 polycomb repressive complex 2 subunitENSG000001064624
Q53H47 / SETMAR / SET domain and mariner transposase fusion geneENSG000001703644


Protein motifs (from Interpro)
Interpro ID Name
 IPR001202  WW domain
 IPR001214  SET domain
 IPR003616  Post-SET domain
 IPR006560  AWS domain
 IPR009078  Ferritin-like superfamily
 IPR013257  Set2 Rpb1 interacting domain
 IPR036020  WW domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0001570 vasculogenesis IEA
 biological_processGO:0001763 morphogenesis of a branching structure IEA
 biological_processGO:0001843 neural tube closure IEA
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006298 mismatch repair IMP
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter IMP
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0010452 histone H3-K36 methylation IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010569 regulation of double-strand break repair via homologous recombination IDA
 biological_processGO:0010793 regulation of mRNA export from nucleus IMP
 biological_processGO:0018023 peptidyl-lysine trimethylation IEA
 biological_processGO:0018026 peptidyl-lysine monomethylation IDA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0032259 methylation IEA
 biological_processGO:0032465 regulation of cytokinesis IDA
 biological_processGO:0032727 positive regulation of interferon-alpha production IDA
 biological_processGO:0034340 response to type I interferon IDA
 biological_processGO:0034728 nucleosome organization IMP
 biological_processGO:0034968 histone lysine methylation IEA
 biological_processGO:0035441 cell migration involved in vasculogenesis IEA
 biological_processGO:0035987 endodermal cell differentiation IEA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0048332 mesoderm morphogenesis IEA
 biological_processGO:0048568 embryonic organ development IEA
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IEA
 biological_processGO:0048863 stem cell differentiation IEA
 biological_processGO:0048864 stem cell development IEA
 biological_processGO:0051607 defense response to virus IEA
 biological_processGO:0060039 pericardium development IEA
 biological_processGO:0060669 embryonic placenta morphogenesis IEA
 biological_processGO:0060977 coronary vasculature morphogenesis IEA
 biological_processGO:0097198 histone H3-K36 trimethylation IMP
 biological_processGO:0097676 histone H3-K36 dimethylation IDA
 biological_processGO:1902850 microtubule cytoskeleton organization involved in mitosis IDA
 biological_processGO:1905634 regulation of protein localization to chromatin IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005694 chromosome ISS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016279 protein-lysine N-methyltransferase activity IDA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0018024 histone-lysine N-methyltransferase activity IEA
 molecular_functionGO:0043014 alpha-tubulin binding IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046975 histone methyltransferase activity (H3-K36 specific) IEA


Pathways (from Reactome)
Pathway description
PKMTs methylate histone lysines


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000075 Renal duplication 
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000098 Increased body height 
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 HP:0000147 polycystic ovaries 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000268 Dolichocephaly 
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000276 Long face 
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 HP:0000280 Coarse facial features 
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000307 Pointed chin 
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 HP:0000316 Hypertelorism 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000403 Recurrent otitis media 
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 HP:0000405 Hearing loss, conductive 
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 HP:0000457 Flat nose 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000708 Behavioural/Psychiatric Abnormality 
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000729 Pervasive developmental disorder 
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 HP:0000750 Impaired language development 
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 HP:0000826 Precocious puberty "The onset of secondary sexual characteristics before a normal age. Although it is difficult to define normal age ranges because of the marked variation with which puberty begins in normal children, precocious puberty can be defined as the onset of puberty before the age of 8 years in girls or 9 years in boys." [HPO:curators]
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 HP:0000858 Menstrual irregularities 
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 HP:0001007 Hirsutism "Abnormally increased hair growth." [HPO:curators]
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001350 Slurred speech 
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001374 Congenital hip dislocation 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001548 Overgrowth 
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001671 Abnormality of the cardiac septa 
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 HP:0001833 Large feet 
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002308 Arnold-Chiari malformation "Arnold-Chiari malformation consists of a downward displacement of the cerebellar tonsils and the medulla through the foramen magnum, sometimes causing hydrocephalus as a result of obstruction of CSF outflow." [HPO:curators]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002591 Polyphagia 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002857 Genu valgum 
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 HP:0002970 Genu varum 
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 HP:0003189 Long nose 
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 HP:0003396 Syringomyelia 
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 HP:0003812 Phenotypic variability 
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 HP:0004233 Advanced maturation/advanced ossification of carpal bones 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004375 Neoplasia of the nervous system 
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 HP:0005562 Multiple renal cysts 
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 HP:0005616 Accelerated skeletal maturation "An abnormally increased rate of skeletal maturation. Accelerated skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0006288 Premature eruption of teeth 
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 HP:0007370 Aplasia/Hypoplasia of the corpus callosum "Absence or underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0008872 Feeding problems in infancy 
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 HP:0009890 High frontal hairline "An abnormally high hairline (border between forehead and scalp hair)." [HPO:curators]
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 HP:0010978 Abnormality of immune system physiology "A functional abnormality of the `immune system` (FMA:9825)." [HPO:probinson, MP:0001790]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0030736 Sacrococcygeal teratoma "A teratoma arising in the sacro-coccygeal region." [] {comment="UToronto:chum"}
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 HP:0100962 Shyness 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
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