ENSG00000119772


Homo sapiens

Features
Gene ID: ENSG00000119772
  
Biological name :DNMT3A
  
Synonyms : DNA methyltransferase 3 alpha / DNMT3A / Q9Y6K1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: p23.3
Gene start: 25227855
Gene end: 25342590
  
Corresponding Affymetrix probe sets: 218457_s_at (Human Genome U133 Plus 2.0 Array)   222640_at (Human Genome U133 Plus 2.0 Array)   244428_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000384237
Ensembl peptide - ENSP00000370132
Ensembl peptide - ENSP00000384852
Ensembl peptide - ENSP00000264709
Ensembl peptide - ENSP00000324375
Ensembl peptide - ENSP00000370122
NCBI entrez gene - 1788     See in Manteia.
OMIM - 602769
RefSeq - XM_017003527
RefSeq - NM_175630
RefSeq - XM_005264175
RefSeq - XM_005264177
RefSeq - XM_011532662
RefSeq - XM_011532663
RefSeq - XM_011532664
RefSeq - XM_011532666
RefSeq - XM_011532667
RefSeq - XM_017003526
RefSeq - NM_001320892
RefSeq - NM_001320893
RefSeq - NM_022552
RefSeq - NM_153759
RefSeq - NM_175629
RefSeq Peptide - NP_001307822
RefSeq Peptide - NP_072046
RefSeq Peptide - NP_715640
RefSeq Peptide - NP_783328
RefSeq Peptide - NP_783329
RefSeq Peptide - NP_001307821
swissprot - A0A0C4DG02
swissprot - F8WE91
swissprot - Q9Y6K1
Ensembl - ENSG00000119772
  
Related genetic diseases (OMIM): 601626 - Acute myeloid leukemia, somatic, 601626
  615879 - Tatton-Brown-Rahman syndrome, 615879

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dnmt3aaENSDARG00000005394Danio rerio
 dnmt3abENSDARG00000015566Danio rerio
 DNMT3AENSGALG00000041454Gallus gallus
 Dnmt3aENSMUSG00000020661Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DNMT3B / Q9UBC3 / DNA methyltransferase 3 betaENSG0000008830545
DNMT3L / Q9UJW3 / DNA methyltransferase 3 likeENSG0000014218216
FP565260.4ENSG000002794936


Protein motifs (from Interpro)
Interpro ID Name
 IPR000313  PWWP domain
 IPR001525  C-5 cytosine methyltransferase
 IPR018117  DNA methylase, C-5 cytosine-specific, active site
 IPR025766  ADD domain
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase
 IPR030487  DNA (cytosine-5)-methyltransferase 3A


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0000278 mitotic cell cycle IEA
 biological_processGO:0006306 DNA methylation IDA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006346 methylation-dependent chromatin silencing IEA
 biological_processGO:0006349 regulation of gene expression by genetic imprinting TAS
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0007568 aging IEA
 biological_processGO:0009636 response to toxic substance IEA
 biological_processGO:0010212 response to ionizing radiation IEA
 biological_processGO:0010288 response to lead ion IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010942 positive regulation of cell death IEA
 biological_processGO:0030182 neuron differentiation IEA
 biological_processGO:0031667 response to nutrient levels IEA
 biological_processGO:0032259 methylation IEA
 biological_processGO:0032355 response to estradiol IEA
 biological_processGO:0032776 DNA methylation on cytosine IEA
 biological_processGO:0033189 response to vitamin A IEA
 biological_processGO:0042220 response to cocaine IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0043045 DNA methylation involved in embryo development IEA
 biological_processGO:0043046 DNA methylation involved in gamete generation IEA
 biological_processGO:0045471 response to ethanol IEA
 biological_processGO:0045814 negative regulation of gene expression, epigenetic TAS
 biological_processGO:0071230 cellular response to amino acid stimulus IEA
 biological_processGO:0071361 cellular response to ethanol IEA
 biological_processGO:0071456 cellular response to hypoxia IEA
 biological_processGO:0090116 C-5 methylation of cytosine IEA
 biological_processGO:0097284 hepatocyte apoptotic process IEA
 cellular_componentGO:0000775 chromosome, centromeric region IEA
 cellular_componentGO:0000791 euchromatin IDA
 cellular_componentGO:0000792 heterochromatin IEA
 cellular_componentGO:0001741 XY body IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005720 nuclear heterochromatin IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016363 nuclear matrix IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003886 DNA (cytosine-5-)-methyltransferase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0009008 DNA-methyltransferase activity TAS
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
PRC2 methylates histones and DNA
RMTs methylate histone arginines
SUMOylation of DNA methylation proteins
DNA methylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000098 Increased body height 
Show

 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
Show

 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
Show

 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
Show

 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0004808 Acute myeloid leukemia "A form of leukemia characterized by overproduction of an early myeloid cell." [HPO:curators]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000119772 DNMT3A / Q9Y6K1 / DNA methyltransferase 3 alpha  / complex
 ENSG00000116030 SUMO1 / P63165 / small ubiquitin-like modifier 1  / complex / reaction
 ENSG00000132475 H3F3B / P84243 / H3 histone family member 3B  / complex / reaction
 ENSG00000074266 EED / O75530 / embryonic ectoderm development  / reaction / complex
 ENSG00000142182 DNMT3L / Q9UJW3 / DNA methyltransferase 3 like  / complex
 ENSG00000178691 SUZ12 / Q15022 / SUZ12 polycomb repressive complex 2 subunit  / reaction / complex
 ENSG00000106462 EZH2 / Q15910 / enhancer of zeste 2 polycomb repressive complex 2 subunit  / reaction / complex
 ENSG00000102054 RBBP7 / Q16576 / RB binding protein 7, chromatin remodeling factor  / reaction / complex
 ENSG00000103275 UBE2I / P63279 / ubiquitin conjugating enzyme E2 I  / reaction
 ENSG00000183598 Q71DI3 / HIST2H3D / histone cluster 2 H3 family member d  / reaction / complex
 ENSG00000162521 RBBP4 / Q09028 / RB binding protein 4, chromatin remodeling factor  / reaction / complex
 ENSG00000276180 P62805 / HIST1H4I / histone cluster 1 H4 family member i  / complex / reaction
 ENSG00000275714 P68431 / HIST1H3A / histone cluster 1 H3 family member a  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr