ENSG00000139132


Homo sapiens

Features
Gene ID: ENSG00000139132
  
Biological name :FGD4
  
Synonyms : FGD4 / FYVE, RhoGEF and PH domain containing 4 / Q96M96
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: p11.21
Gene start: 32399529
Gene end: 32646050
  
Corresponding Affymetrix probe sets: 227948_at (Human Genome U133 Plus 2.0 Array)   230559_x_at (Human Genome U133 Plus 2.0 Array)   242445_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000437109
Ensembl peptide - ENSP00000434356
Ensembl peptide - ENSP00000446695
Ensembl peptide - ENSP00000462623
Ensembl peptide - ENSP00000449614
Ensembl peptide - ENSP00000449273
Ensembl peptide - ENSP00000379089
Ensembl peptide - ENSP00000394487
Ensembl peptide - ENSP00000431323
Ensembl peptide - ENSP00000433666
Ensembl peptide - ENSP00000434062
NCBI entrez gene - 121512     See in Manteia.
OMIM - 611104
RefSeq - XM_017018805
RefSeq - NM_001304484
RefSeq - NM_001330373
RefSeq - NM_001330374
RefSeq - NM_139241
RefSeq - XM_005253304
RefSeq - XM_005253307
RefSeq - XM_005253308
RefSeq - XM_005253309
RefSeq - XM_005253310
RefSeq - XM_011520554
RefSeq - XM_011520555
RefSeq - XM_011520556
RefSeq - XM_011520557
RefSeq - XM_011520558
RefSeq - XM_011520559
RefSeq - XM_017018803
RefSeq - XM_017018804
RefSeq - NM_001304480
RefSeq - NM_001304481
RefSeq - NM_001304483
RefSeq Peptide - NP_001291410
RefSeq Peptide - NP_001291412
RefSeq Peptide - NP_001291413
RefSeq Peptide - NP_001317302
RefSeq Peptide - NP_001317303
RefSeq Peptide - NP_640334
RefSeq Peptide - NP_001291409
swissprot - J3KSS3
swissprot - B7Z493
swissprot - E9PQT1
swissprot - Q96M96
swissprot - E9PNX0
swissprot - E9PJX4
swissprot - F8VVF1
swissprot - F8VWL3
swissprot - F8W1R0
swissprot - H0YDQ0
Ensembl - ENSG00000139132
  
Related genetic diseases (OMIM): 609311 - Charcot-Marie-Tooth disease, type 4H, 609311
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fgd4aENSDARG00000101471Danio rerio
 fgd4bENSDARG00000060248Danio rerio
 FGD4ENSGALG00000012932Gallus gallus
 Fgd4ENSMUSG00000022788Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FGD1 / P98174 / FYVE, RhoGEF and PH domain containing 1ENSG0000010230244
FGD2 / Q7Z6J4 / FYVE, RhoGEF and PH domain containing 2ENSG0000014619236
FGD3 / Q5JSP0 / FYVE, RhoGEF and PH domain containing 3ENSG0000012708433
FGD6 / Q6ZV73 / FYVE, RhoGEF and PH domain containing 6ENSG0000018026325
FGD5 / Q6ZNL6 / FYVE, RhoGEF and PH domain containing 5ENSG0000015478322
Q96S99 / PLEKHF1 / pleckstrin homology and FYVE domain containing 1ENSG000001662898
Q9H8W4 / PLEKHF2 / pleckstrin homology and FYVE domain containing 2ENSG000001758957


Protein motifs (from Interpro)
Interpro ID Name
 IPR000219  Dbl homology (DH) domain
 IPR000306  FYVE zinc finger
 IPR001849  Pleckstrin homology domain
 IPR011993  PH-like domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017455  Zinc finger, FYVE-related
 IPR035899  Dbl homology (DH) domain superfamily
 IPR035941  FGD1-4, C-terminal PH domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization ISS
 biological_processGO:0007186 G-protein coupled receptor signaling pathway TAS
 biological_processGO:0008360 regulation of cell shape ISS
 biological_processGO:0030032 lamellipodium assembly IEA
 biological_processGO:0030035 microspike assembly IEA
 biological_processGO:0030036 actin cytoskeleton organization ISS
 biological_processGO:0035023 regulation of Rho protein signal transduction IEA
 biological_processGO:0043065 positive regulation of apoptotic process TAS
 biological_processGO:0043087 regulation of GTPase activity ISS
 biological_processGO:0046847 filopodium assembly ISS
 biological_processGO:0051056 regulation of small GTPase mediated signal transduction TAS
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0001726 ruffle ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005794 Golgi apparatus ISS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0030027 lamellipodium IEA
 cellular_componentGO:0030175 filopodium IEA
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005085 guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0005089 Rho guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0031267 small GTPase binding ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
NRAGE signals death through JNK
Rho GTPase cycle
G alpha (12/13) signalling events


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001270 Motor retardation 
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 HP:0001284 Areflexia 
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 HP:0001425 Heterogeneous 
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 HP:0001761 Pes cavus 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002515 Waddling gait 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002936 Distal sensory impairment 
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 HP:0003380 Decreased number of myelinated fibers "A loss of myelinated nerve fibers (in general, this finding can be observed on nerve biopsy)." [HPO:curators]
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 HP:0003383 Onion bulb formations on nerve biopsy 
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 HP:0003431 Decreased motor nerve conduction velocity (NCV) 
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 HP:0003484 Upper limb involvement may occur later 
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 HP:0003593 Early onset 
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 HP:0008944 Distal lower limb muscle weakness and atrophy "Amyotrophy of distal lower leg muscles with resultant weakness." [HPO:curators]
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 HP:0009053 Muscle weakness, lower limb, distal "Weakness of the distal muscles of the legs." [HPO:curators]
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 HP:0011096 Peripheral demyelination "A loss of myelin from the internode regions along myelinated nerve fibers of the peripheral nervous system." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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