ENSG00000156983


Homo sapiens

Features
Gene ID: ENSG00000156983
  
Biological name :BRPF1
  
Synonyms : bromodomain and PHD finger containing 1 / BRPF1 / P55201
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p25.3
Gene start: 9731729
Gene end: 9748018
  
Corresponding Affymetrix probe sets: 204481_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000404235
Ensembl peptide - ENSP00000402485
Ensembl peptide - ENSP00000410210
Ensembl peptide - ENSP00000416728
Ensembl peptide - ENSP00000373340
Ensembl peptide - ENSP00000398863
NCBI entrez gene - 7862     See in Manteia.
OMIM - 602410
RefSeq - XM_011534102
RefSeq - NM_001319049
RefSeq - NM_001319050
RefSeq - NM_004634
RefSeq - XM_005265449
RefSeq - XM_005265450
RefSeq - XM_005265452
RefSeq - XM_011534101
RefSeq - NM_001003694
RefSeq Peptide - NP_004625
RefSeq Peptide - NP_001003694
RefSeq Peptide - NP_001305978
RefSeq Peptide - NP_001305979
swissprot - P55201
swissprot - C9JHC0
swissprot - C9JDK5
Ensembl - ENSG00000156983
  
Related genetic diseases (OMIM): 617333 - Intellectual developmental disorder with dysmorphic facies and ptosis, 617333
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 brpf1ENSDARG00000103665Danio rerio
 BRPF1ENSGALG00000033529Gallus gallus
 Brpf1ENSMUSG00000001632Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BRD1 / O95696 / bromodomain containing 1ENSG0000010042550
BRPF3 / Q9ULD4 / bromodomain and PHD finger containing 3ENSG0000009607049
JADE3 / Q92613 / jade family PHD finger 3ENSG0000010222115
MLLT6 / MLLT6, PHD finger containingENSG0000027502314
JADE1 / Q6IE81 / jade family PHD finger 1ENSG0000007768414
JADE2 / Q9NQC1 / jade family PHD finger 2ENSG0000004314314
MLLT10 / P55197 / MLLT10, histone lysine methyltransferase DOT1L cofactorENSG0000007840313
PHF14 / O94880 / PHD finger protein 14ENSG0000010644313


Protein motifs (from Interpro)
Interpro ID Name
 IPR000313  PWWP domain
 IPR001487  Bromodomain
 IPR001965  Zinc finger, PHD-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR018359  Bromodomain, conserved site
 IPR019542  Enhancer of polycomb-like, N-terminal
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR034732  Extended PHD (ePHD) domain
 IPR035502  BR140-related, PWWD domain
 IPR036427  Bromodomain-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0043966 histone H3 acetylation IDA
 biological_processGO:0043972 histone H3-K23 acetylation IMP
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:1901796 regulation of signal transduction by p53 class mediator TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0070776 MOZ/MORF histone acetyltransferase complex IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043994 histone acetyltransferase activity (H3-K23 specific) IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
HATs acetylate histones
Regulation of TP53 Activity through Acetylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
Show

 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000322 Short philtrum 
Show

 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
Show

 HP:0000343 Long philtrum 
Show

 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
Show

 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
Show

 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
Show

 HP:0000494 Downward slanting palpebral fissures 
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
Show

 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
Show

 HP:0000750 Impaired language development 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001511 Intrauterine growth retardation 
Show

 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
Show

 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
Show

 HP:0003577 Onset at birth 
Show

 HP:0003828 Variable expressivity 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
Show

 HP:0012368 Flat face "Absence of concavity or convexity of the face when viewed in profile." [pmid:19125436]
Show

 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
Show

 HP:0012447 Abnormal myelination "Any anomaly in the process by which myelin sheaths are formed and maintained around neurons." [HPO:probinson, MP:0000920]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000083168 KAT6A / Q92794 / lysine acetyltransferase 6A  / complex
 ENSG00000163875 MEAF6 / Q9HAF1 / MYST/Esa1 associated factor 6  / complex
 ENSG00000168395 ING5 / Q8WYH8 / inhibitor of growth family member 5  / complex
 ENSG00000141510 TP53 / P04637 / tumor protein p53  / complex / reaction
 ENSG00000142208 AKT1 / P31749 / AKT serine/threonine kinase 1  / reaction
 ENSG00000140464 PML / P29590 / promyelocytic leukemia  / reaction / complex
 ENSG00000156650 KAT6B / Q8WYB5 / lysine acetyltransferase 6B  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr