ENSG00000161011


Homo sapiens

Features
Gene ID: ENSG00000161011
  
Biological name :SQSTM1
  
Synonyms : Q13501 / sequestosome 1 / SQSTM1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q35.3
Gene start: 179806398
Gene end: 179838078
  
Corresponding Affymetrix probe sets: 201471_s_at (Human Genome U133 Plus 2.0 Array)   213112_s_at (Human Genome U133 Plus 2.0 Array)   235530_at (Human Genome U133 Plus 2.0 Array)   239004_at (Human Genome U133 Plus 2.0 Array)   242568_s_at (Human Genome U133 Plus 2.0 Array)   244804_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000374455
Ensembl peptide - ENSP00000394534
Ensembl peptide - ENSP00000487071
Ensembl peptide - ENSP00000427308
Ensembl peptide - ENSP00000425957
Ensembl peptide - ENSP00000424477
Ensembl peptide - ENSP00000424195
Ensembl peptide - ENSP00000405061
Ensembl peptide - ENSP00000353944
NCBI entrez gene - 8878     See in Manteia.
OMIM - 601530
RefSeq - XM_017010010
RefSeq - NM_001142298
RefSeq - NM_001142299
RefSeq - NM_003900
RefSeq Peptide - NP_003891
RefSeq Peptide - NP_001135770
RefSeq Peptide - NP_001135771
swissprot - E9PFW8
swissprot - E7EMC7
swissprot - E3W990
swissprot - C9JRJ8
swissprot - D6RBF1
swissprot - C9J6J8
swissprot - Q13501
Ensembl - ENSG00000161011
  
Related genetic diseases (OMIM): 167250 - Paget disease of bone 3, 167250
  616437 - Frontotemporal dementia and/or amyotrophic lateral sclerosis 3, 616437
  617145 - Neurodegeneration with ataxia, dystonia, and gaze palsy, childhood-onset, 617145
  617158 - Myopathy, distal, with rimmed vacuoles, 617158
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sqstm1ENSDARG00000075014Danio rerio
 SQSTM1ENSGALG00000035804Gallus gallus
 Q64337ENSMUSG00000015837Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000270  PB1 domain
 IPR000433  Zinc finger, ZZ-type
 IPR009060  UBA-like superfamily
 IPR015940  Ubiquitin-associated domain
 IPR033741  Sequestosome-1, UBA domain
 IPR034866  Sequestosome-1, PB1 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0000422 autophagy of mitochondrion NAS
 biological_processGO:0000423 mitophagy IGI
 biological_processGO:0001934 positive regulation of protein phosphorylation IEA
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0002931 response to ischemia IEA
 biological_processGO:0006468 protein phosphorylation IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process TAS
 biological_processGO:0006914 autophagy TAS
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0007032 endosome organization IDA
 biological_processGO:0008104 protein localization TAS
 biological_processGO:0010821 regulation of mitochondrion organization NAS
 biological_processGO:0016197 endosomal transport TAS
 biological_processGO:0016236 macroautophagy ISS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0035556 intracellular signal transduction TAS
 biological_processGO:0035973 aggrephagy IPI
 biological_processGO:0043065 positive regulation of apoptotic process TAS
 biological_processGO:0043066 negative regulation of apoptotic process TAS
 biological_processGO:0043122 regulation of I-kappaB kinase/NF-kappaB signaling IMP
 biological_processGO:0044130 negative regulation of growth of symbiont in host IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II TAS
 biological_processGO:0046578 regulation of Ras protein signal transduction NAS
 biological_processGO:0051291 protein heterooligomerization IEA
 biological_processGO:0061635 regulation of protein complex stability IDA
 biological_processGO:0061912 selective autophagy IMP
 biological_processGO:0070498 interleukin-1-mediated signaling pathway TAS
 biological_processGO:0098780 response to mitochondrial depolarisation IGI
 biological_processGO:1900273 positive regulation of long-term synaptic potentiation ISS
 biological_processGO:1903078 positive regulation of protein localization to plasma membrane ISS
 biological_processGO:1905719 protein localization to perinuclear region of cytoplasm IDA
 cellular_componentGO:0000407 phagophore assembly site IEA
 cellular_componentGO:0000932 P-body IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0005776 autophagosome IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016234 inclusion body IDA
 cellular_componentGO:0016235 aggresome IBA
 cellular_componentGO:0016605 PML body IEA
 cellular_componentGO:0030017 sarcomere IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0044753 amphisome IDA
 cellular_componentGO:0044754 autolysosome IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0097225 sperm midpiece IEA
 cellular_componentGO:0097413 Lewy body IEA
 molecular_functionGO:0004674 protein serine/threonine kinase activity NAS
 molecular_functionGO:0005080 protein kinase C binding IPI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0019901 protein kinase binding IDA
 molecular_functionGO:0030971 receptor tyrosine kinase binding TAS
 molecular_functionGO:0031625 ubiquitin protein ligase binding IPI
 molecular_functionGO:0035255 ionotropic glutamate receptor binding ISS
 molecular_functionGO:0042169 SH2 domain binding IDA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0043130 ubiquitin binding TAS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070530 K63-linked polyubiquitin modification-dependent protein binding IDA


Pathways (from Reactome)
Pathway description
NRIF signals cell death from the nucleus
p75NTR recruits signalling complexes
NF-kB is activated and signals survival
Pink/Parkin Mediated Mitophagy
Interleukin-1 signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000020 Urinary incontinence "Loss of the ability to control the urinary bladder leading to involuntary urination." [HPO:sdoelken]
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 HP:0000217 Xerostomia "Dryness of the mouth due to salivary gland dysfunction." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000474 Excess nuchal skin 
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 HP:0000511 Vertical supranuclear gaze palsy 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000657 Oculomotor apraxia 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000710 Hyperorality 
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 HP:0000711 Restlessness 
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 HP:0000712 Emotional lability 
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 HP:0000713 Agitation 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000719 Inappropriate behavior 
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 HP:0000723 Restrictive behaviour, interests, and activities 
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0000734 Disinhibition 
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 HP:0000737 Irritability 
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 HP:0000739 Anxiety 
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 HP:0000741 Apathy 
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 HP:0000751 Personality changes 
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 HP:0000757 Lack of insight 
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 HP:0000821 Hypothyroidism 
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001268 Mental deterioration 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001283 Bulbar palsy "Bulbar weakness (or bulbar palsy) refers to bilateral impairment of function of the lower cranial nerves IX, X, XI and XII, which occurs due to lower motor neuron lesion either at nuclear or fascicular level in the medulla or from bilateral lesions of the lower cranial nerves outside the brain-stem. Bulbar weakness is often associated with difficulty in chewing, weakness of the facial muscles, dysarthria, palatal weakness and regurgitation of fluids, dysphagia, and dysphonia." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001310 Dysmetria 
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001638 Cardiomyopathy 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002071 Extrapyramidal signs 
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 HP:0002075 Dysdiadochokinesis "An inability to perform rapidly alternating movements, such as rhythmically tapping the fingers on the knee, generally related to a cerebellar lesion." [HPO:curators]
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 HP:0002094 Dyspnea 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002145 Frontotemporal dementia 
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 HP:0002180 Neurodegeneration 
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 HP:0002273 Tetraparesis 
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 HP:0002300 Mutism 
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 HP:0002354 Memory impairment 
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 HP:0002357 Dysphasia 
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 HP:0002366 Lower motor neuron signs 
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 HP:0002371 Loss of speech 
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 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
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 HP:0002385 Paraparesis 
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 HP:0002423 Long-tract signs 
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 HP:0002442 Dyscalculia 
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 HP:0002446 Astrocytosis 
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 HP:0002463 Language impairment 
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 HP:0002465 Poor speech 
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 HP:0002493 Corticospinal tract dysfunction 
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 HP:0002500 Abnormality of the cerebral white matter 
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 HP:0002512 Brain stem compression 
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 HP:0002644 Abnormality of the pelvis "An abnormality of the bony pelvis (pelvic girdle); which is a ring of bones connecting the vertebral column to the femurs." [HPO:curators]
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 HP:0002653 Bone pain 
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 HP:0002659 Increased susceptibility to fractures "An abnormally increased tendency to fractures of bones caused by an abnormal reduction in bone strength that is generally associated with an increased risk of fracture." [HPO:sdoelken]
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 HP:0002669 Osteogenic sarcoma 
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 HP:0002797 Osteolysis 
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 HP:0002878 Early respiratory failure 
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 HP:0002953 Vertebral compression fractures 
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 HP:0003080 Hydroxyprolinuria 
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 HP:0003084 Fractures of the long bones "An increased tendency to fractures of the long bones (Mainly, the femur, tibia, fibula,humerus, radius, and ulna)." [HPO:curators]
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 HP:0003155 Elevated alkaline phosphatase "Abnormally increased serum levels of `alkaline phosphatase activity` (GO:0004035)." [HPO:probinson]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003376 Steppage gait "An abnormal gait pattern that arises from weakness of the pretibial and peroneal muscles due to a lower motor neuron lesion. Affected patients have footdrop and are unable to dorsiflex and evert the foot. The leg is lifted high on walking so that the toes clear the ground, and there may be a slapping noise when the foot strikes the ground again." [HPO:curators]
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 HP:0003394 Muscle cramps 
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 HP:0003438 Absent ankle reflexes 
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 HP:0003458 EMG myopathic abnormalities "The presence of abnormal electromyographic patterns indicative of myopathy, such as small-short polyphasic motor unit potentials." [HPO:curators]
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 HP:0003470 Paralysis "Paralysis of voluntary muscles means loss of contraction due to interruption of one or more motor pathways from the brain to the muscle fibers. Although the word paralysis is often used interchangeably to mean either complete or partial loss of muscle strength, it is preferable to use paralysis or plegia for complete or severe loss of muscle strength, and paresis for partial or slight loss. Motor paralysis results from deficits of the upper motor neurons (corticospinal, corticobulbar, or subcorticospinal). Motor paralysis is often accompanied by an impairment in the facility of movement." [HPO:curators]
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 HP:0003547 Shoulder girdle muscle weakness "The shoulder, or pectoral, girdle is composed of the clavicles and the scapulae. Shoulder-girdle weakness refers to lack of strength of the muscles attaching to these bones, that is, lack of strength of the muscles around the shoulders." [HPO:curators]
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 HP:0003557 Increased variability in muscle fiber size "An abnormally high degree of muscle fiber size variation. This phenotypic feature can be observed upon muscle biopsy." [HPO:curators]
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 HP:0003676 Progressive disorder 
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 HP:0003691 Scapular winging 
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 HP:0003724 Shoulder girdle muscle atrophy "Amyotrophy affecting the muscles of the shoulder girdle." [HPO:curators]
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 HP:0003805 Rimmed vacuoles 
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 HP:0003812 Phenotypic variability 
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 HP:0003828 Variable expressivity 
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 HP:0005686 Patchy osteosclerosis "Patchy (irregular) increase in bone density. This can take on many forms depending on severity and distribution as can be seen on x-rays." [HPO:curators]
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 HP:0005945 Laryngeal obstruction 
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 HP:0006251 Limited wrist extension 
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 HP:0006467 Limited shoulder movement "A limitation of the range of movement of the shoulder joint." [HPO:curators]
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 HP:0006480 Premature loss of teeth 
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 HP:0006824 Cranial nerve paralysis 
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 HP:0006892 Cerebral atrophy, frontotemporal, progressive 
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 HP:0007210 Lower limb hypotrophy 
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 HP:0007256 Mild pyramidal signs 
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 HP:0007354 Amyotrophic lateral sclerosis 
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 HP:0008180 Mildly elevated creatine phosphokinase 
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 HP:0008513 Bilateral conductive deafness 
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 HP:0008963 Tibialis weakness and atrophy "Muscle weakness and atrophy affecting the tibialis anterior muscle." [HPO:curators]
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 HP:0009027 Foot dorsiflexor weakness 
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 HP:0009077 Weakness of long finger extensor muscles 
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 HP:0010522 Dyslexia "A learning disorder characterized primarily by difficulties in learning to read and spell. Dyslectic children also exhibit a tendency to read words from right to left and to confuse letters such as b and d whose orientation is important for their identification. Children with dyslexia appear to be impaired in phonemic skills (the ability to associate visual symbols with the sounds they represent)." [HPO:curators]
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 HP:0010526 Dysgraphia "A writing disability in the absence of motor or sensory deficits of the upper extremities, resulting in an impairment in the ability to write regardless of the ability to read and not due to intellectual impairment." [HPO:curators]
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 HP:0010529 Echolalia "The tendency to repeat vocalizations made by another person." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0011204 EEG with continuous slow activity "EEG showing diffuse slowing without interruption." [HPO:jalbers]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012515 Hip flexor weakness "Reduced ability to flex the femur, that is, to pull the knee upward." [ORCID:0000-0001-5208-3432]
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 HP:0012531 Pain "An unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage." [ORCID:0000-0001-5208-3432]
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 HP:0012548 Skeletal muscle fatty infiltration "Deposition of fat within muscles." [HPO:probinson]
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 HP:0012658 Abnormal brain FDG positron emission tomography "An anomaly detectable in [18F]-fluorodeoxyglucose (FDG) positron emission tomography (PET) brain scans. Glucose uptake measured with FDG-PET is a marker of neuronal metabolic activity." [HPO:probinson]
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 HP:0012671 Abulia "Poverty of behavior and speech output, lack of initiative, loss of emotional responses, psychomotor slowing, and prolonged speech latency." [HPO:probinson, pmid:16030444, UToronto:HTrang]
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 HP:0030007 EMG: Positive sharp waves "These are spontaneous firing action potentials stimulated by needle movement of an injured muscle fiber. There is propagation to, but not past, the needle tip. This inhibits the display of the negative deflection of the waveform." []
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 HP:0030195 Fatigable weakness of swallowing muscles "A type of weakness of the muscles involved in swallowing that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [pmid:17986328, UK:rheller]
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 HP:0030196 Fatigable weakness of respiratory muscles "A type of weakness of the muscles involved in breathing (respiration) that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [UNCL:mbertoli]
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 HP:0030212 Collectionism "Excessive or pathological tendency to save and collect possessions." []
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 HP:0030213 Emotional blunting "Lack of emotional reactivity and empathy for situations or persons, sometime also for family members." [ICM:PCaroppo]
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 HP:0030223 Perseveration "Perseveration can be defined as the contextually inappropriate and unintentional repetition of a response or behavioral unit. In other words, the observed repetitiveness does not meet the demands of the situation, is not the product of deliberation, and may even unfold despite counterintention. Perseveration can therefore be differentiated from goal-directed and intentional forms of repetition, such as linguistic redundancies designed to enhance communicative or poetic impact." [HPO:probinson, pmid:9050113]
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 HP:0040047 Abnormality of the right hemidiaphragm 
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 HP:0100284 EMG: myotonic discharges 
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 HP:0100299 Muscle fiber inclusion bodies 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000064300 NGFR / P08138 / nerve growth factor receptor  / reaction / complex
 ENSG00000142856 Q13352 / ITGB3BP / integrin subunit beta 3 binding protein  / reaction / complex
 ENSG00000163558 PRKCI / P41743 / protein kinase C iota  / complex / reaction
 ENSG00000104365 IKBKB / O14920 / inhibitor of nuclear factor kappa B kinase subunit beta  / complex / reaction
 ENSG00000134259 NGF / P01138 / nerve growth factor  / complex / reaction
 ENSG00000198909 MAP3K3 / Q99759 / mitogen-activated protein kinase kinase kinase 3  / complex
 ENSG00000184216 IRAK1 / P51617 / interleukin 1 receptor associated kinase 1  / complex / reaction
 ENSG00000175104 TRAF6 / Q9Y4K3 / TNF receptor associated factor 6  / complex / reaction






 

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