ENSG00000165699


Homo sapiens

Features
Gene ID: ENSG00000165699
  
Biological name :TSC1
  
Synonyms : Q92574 / TSC1 / TSC complex subunit 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: q34.13
Gene start: 132891348
Gene end: 132946874
  
Corresponding Affymetrix probe sets: 209390_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494502
Ensembl peptide - ENSP00000494682
Ensembl peptide - ENSP00000494685
Ensembl peptide - ENSP00000494743
Ensembl peptide - ENSP00000494847
Ensembl peptide - ENSP00000494916
Ensembl peptide - ENSP00000495158
Ensembl peptide - ENSP00000495428
Ensembl peptide - ENSP00000495533
Ensembl peptide - ENSP00000495546
Ensembl peptide - ENSP00000495554
Ensembl peptide - ENSP00000495598
Ensembl peptide - ENSP00000495654
Ensembl peptide - ENSP00000495821
Ensembl peptide - ENSP00000495830
Ensembl peptide - ENSP00000496066
Ensembl peptide - ENSP00000496126
Ensembl peptide - ENSP00000496263
Ensembl peptide - ENSP00000496292
Ensembl peptide - ENSP00000496398
Ensembl peptide - ENSP00000496691
Ensembl peptide - ENSP00000496772
Ensembl peptide - ENSP00000298552
Ensembl peptide - ENSP00000386093
Ensembl peptide - ENSP00000394524
Ensembl peptide - ENSP00000444017
Ensembl peptide - ENSP00000493608
Ensembl peptide - ENSP00000493639
Ensembl peptide - ENSP00000493773
Ensembl peptide - ENSP00000493963
Ensembl peptide - ENSP00000494104
Ensembl peptide - ENSP00000494365
Ensembl peptide - ENSP00000494639
NCBI entrez gene - 7248     See in Manteia.
OMIM - 605284
RefSeq - XM_017015098
RefSeq - XM_017015097
RefSeq - XM_017015099
RefSeq - XM_017015100
RefSeq - XM_017015101
RefSeq - NM_000368
RefSeq - NM_001162426
RefSeq - NM_001162427
RefSeq - XM_005272211
RefSeq - XM_006717271
RefSeq - XM_011518979
RefSeq - XM_017015096
RefSeq Peptide - NP_000359
RefSeq Peptide - NP_001155898
RefSeq Peptide - NP_001155899
swissprot - Q92574
swissprot - Q59IT9
swissprot - X5D9D2
swissprot - Q86WV8
Ensembl - ENSG00000165699
  
Related genetic diseases (OMIM): 191100 - Tuberous sclerosis-1, 191100
  606690 - Lymphangioleiomyomatosis, 606690
  607341 - Focal cortical dysplasia, type II, somatic, 607341
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tsc1aENSDARG00000026048Danio rerio
 tsc1bENSDARG00000057918Danio rerio
 ENSGALG00000043548Gallus gallus
 ENSGALG00000003500Gallus gallus
 Tsc1ENSMUSG00000026812Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007483  Hamartin
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001822 kidney development IEA
 biological_processGO:0001843 neural tube closure IEA
 biological_processGO:0001952 regulation of cell-matrix adhesion IMP
 biological_processGO:0002250 adaptive immune response IEA
 biological_processGO:0006407 rRNA export from nucleus IMP
 biological_processGO:0006417 regulation of translation IDA
 biological_processGO:0006813 potassium ion transport IEA
 biological_processGO:0007050 cell cycle arrest TAS
 biological_processGO:0007160 cell-matrix adhesion IMP
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0008285 negative regulation of cell proliferation IMP
 biological_processGO:0008344 adult locomotory behavior ISS
 biological_processGO:0010977 negative regulation of neuron projection development IEA
 biological_processGO:0016239 positive regulation of macroautophagy IEA
 biological_processGO:0016242 negative regulation of macroautophagy ISS
 biological_processGO:0017148 negative regulation of translation IMP
 biological_processGO:0021766 hippocampus development IEA
 biological_processGO:0021987 cerebral cortex development IEA
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0032007 negative regulation of TOR signaling ISS
 biological_processGO:0032868 response to insulin IDA
 biological_processGO:0034260 negative regulation of GTPase activity IEA
 biological_processGO:0042552 myelination IEA
 biological_processGO:0043379 memory T cell differentiation IEA
 biological_processGO:0043666 regulation of phosphoprotein phosphatase activity IMP
 biological_processGO:0045792 negative regulation of cell size IEA
 biological_processGO:0045859 regulation of protein kinase activity IEA
 biological_processGO:0046323 glucose import IEA
 biological_processGO:0046627 negative regulation of insulin receptor signaling pathway IBA
 biological_processGO:0050808 synapse organization IEA
 biological_processGO:0050821 protein stabilization IDA
 biological_processGO:0051291 protein heterooligomerization IEA
 biological_processGO:0051492 regulation of stress fiber assembly IDA
 biological_processGO:0051496 positive regulation of stress fiber assembly IEA
 biological_processGO:0051726 regulation of cell cycle IBA
 biological_processGO:0051893 regulation of focal adhesion assembly IEA
 biological_processGO:0051894 positive regulation of focal adhesion assembly IDA
 biological_processGO:0055007 cardiac muscle cell differentiation IEA
 biological_processGO:0090630 activation of GTPase activity IDA
 biological_processGO:0090650 cellular response to oxygen-glucose deprivation ISS
 biological_processGO:1901214 regulation of neuron death ISS
 biological_processGO:1903204 negative regulation of oxidative stress-induced neuron death IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005811 lipid droplet IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005884 actin filament IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005938 cell cortex IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030027 lamellipodium IDA
 cellular_componentGO:0030426 growth cone IEA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0033596 TSC1-TSC2 complex IDA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm ISS
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0032794 GTPase activating protein binding IEA
 molecular_functionGO:0047485 protein N-terminus binding IPI
 molecular_functionGO:0051087 chaperone binding IPI


Pathways (from Reactome)
Pathway description
Macroautophagy
Inhibition of TSC complex formation by PKB
Energy dependent regulation of mTOR by LKB1-AMPK
TP53 Regulates Metabolic Genes
TBC/RABGAPs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000008 Abnormality of female internal genitalia 
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 HP:0000083 Renal failure 
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 HP:0000107 Renal cysts 
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 HP:0000169 Gingival fibromatosis "Gingival fibromatosis is characterized by a slowly progressive benign enlargement of the oral gingival tissues. The condition results in the teeth being partially or totally engulfed by keratinized gingiva, causing aesthetic and functional problems. Both genetic and pharmacologically induced forms of gingival fibromatosis are known. The most common genetic form, hereditary gingival fibromatosis (HGF), is usually transmitted as an autosomal dominant trait, although sporadic cases are common and autosomal recessive inheritance has been reported." [HPO:curators]
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 HP:0000230 Gingivitis 
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 HP:0000238 Hydrocephalus 
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 HP:0000269 Prominent occiput 
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000648 Optic atrophy 
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 HP:0000708 Behavioural/Psychiatric Abnormality 
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 HP:0000717 Autism 
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 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
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 HP:0000821 Hypothyroidism 
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 HP:0000826 Precocious puberty "The onset of secondary sexual characteristics before a normal age. Although it is difficult to define normal age ranges because of the marked variation with which puberty begins in normal children, precocious puberty can be defined as the onset of puberty before the age of 8 years in girls or 9 years in boys." [HPO:curators]
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 HP:0000957 Cafe-au-lait spots 
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 HP:0001000 Abnormality of skin pigmentation 
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 HP:0001004 Lymphedema 
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 HP:0001052 Nevus flammeus "A congenital vascular malformation consisting of superficial and deep dilated capillaries in the skin which produce a reddish to purplish discolouration of the skin." [HPO:sdoelken]
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001269 Hemiparesis "Relatively mild weakness in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001392 Abnormality of the liver 
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 HP:0001425 Heterogeneous 
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 HP:0001428 Somatic mutation 
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 HP:0001482 Subcutaneous nodules 
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 HP:0001541 Ascites 
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001716 Wolf-Parkinson-White syndrome 
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 HP:0001945 Fever 
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 HP:0002027 Abdominal pain 
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 HP:0002086 Respiratory abnormality 
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 HP:0002091 Restrictive lung disease 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002094 Dyspnea 
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 HP:0002097 Emphysema 
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 HP:0002105 Hemoptysis "Coughing up (expectoration) of blood or blood-streaked sputum from the larynx, trachea, bronchi, or lungs." [HPO:curators]
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 HP:0002107 Pneumothorax 
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 HP:0002113 Pulmonary infiltrates 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002239 Gastrointestinal hemorrhage 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002384 Complex partial seizures "A `partial seizure` (HP:0007359) characterized by impairment or loss of consciousness." [HPO:curators]
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 HP:0002446 Astrocytosis 
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002516 Increased intracranial pressure 
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 HP:0002539 Cortical dysplasia 
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 HP:0002617 Aneurysm 
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 HP:0002716 Lymphadenopathy 
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 HP:0002888 Ependymoma 
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 HP:0002894 Pancreatic cancer 
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 HP:0003581 Onset in adulthood 
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 HP:0003593 Early onset 
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 HP:0003745 Sporadic 
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 HP:0003812 Phenotypic variability 
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 HP:0004099 Macrodactyly 
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 HP:0005562 Multiple renal cysts 
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 HP:0005584 Renal cell carcinoma "Renal cell carcinoma (also known as hypernephroma) is the most common form of kidney cancer arising from the proximal renal tubule. The tissue of origin for renal cell carcinoma is the proximal renal tubular epithelium. Renal cell carcinoma can be classified as 1) clear cell carcinoma, 2) papillary carcinoma, 3) chromophobe renal carcinoma, and 4) collecting duct carcinoma." [HPO:curators]
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 HP:0006772 Multiple bilateral renal angiomyolipoma "Angiomyolipoma is a benign renal neoplasm composed of fat, vascular, and smooth muscle elements." [HPO:curators]
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0007042 Focal white matter lesions 
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 HP:0007370 Aplasia/Hypoplasia of the corpus callosum "Absence or underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0007449 Confetti-like hypopigmented macules 
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 HP:0007565 Multiple cafe-au-lait spots 
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 HP:0009554 Projection of scalp hair onto lateral cheek "An tongue-like extension of hair towards the cheeks." [HPO:curators]
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 HP:0009592 Astrocytoma "Astrocytoma is a neoplasm of the central nervous system derived from astrocytes." [HPO:curators]
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 HP:0009594 Retinal hamartoma "A hamartoma (a benign, focal malformation consisting of a disorganized mixture of cells and tissues) of the retina." [HPO:curators]
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 HP:0009716 Subependymal nodules "Small nodular masses which originate in the subependymal region of the lateral ventricles and protrude into the ventricular cavity. They may represent subependymal hamartomas of tuberous sclerosis or nodular heterotopia of grey matter." [HPO:curators]
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 HP:0009717 Cortical tubers "Cortical tubers in the brain are hamartomatous lesions typically located at the gray-white matter interface, commonly in the frontal and parietal lobes. Cortical tubers are composed of abnormal glial and neural cells, and the size, number, and location vary among patients." [HPO:curators]
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 HP:0009718 Subependymal giant-cell astrocytoma "A demarcated, largely intraventricular tumor in the region of the foramen of Monro composed of spindle to large plump or ganglion-like cells with eosinophilic to amphophilic cytoplasm and somewhat pleomorphic nuclei with occasional prominent nucleoli. These tumors are almost always associated with tuberous sclerosis." [HPO:curators]
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 HP:0009719 Hypomelanotic macules "Hypomelanotic macules ("ash leaf spots") are white or lighter patches of skin that may appear anywhere on the body and are caused by a lack of melanin. White ash leaf-shaped macules are considered to be characteristic of tuberous sclerosis." [HPO:curators]
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 HP:0009720 Adenoma sebaceum "Facial angiofibromas, also known as adenoma sebaceum, are reddish papillary lesions (fibrous skin tumors) that are found around the nose, cheeks, and chin and considered to be characteristic of tuberous sclerosis." [HPO:curators]
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 HP:0009721 Shagreen patch "A plaque representing a connective-tissue nevus. Connective tissue naevi are uncommon skin lesions that occur when the deeper layers of the skin do not develop correctly or the components of these layers occur in the wrong proportion. Shagreen patches are oval-shaped and nevoid, skin-coloured or occasionally pigmented, smooth or crinkled, The word shagreen refers to a type of roughened untanned leather." [HPO:curators]
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 HP:0009722 Dental enamel pits "The presence of pits in the dental enamel." [HPO:curators]
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 HP:0009724 Subungual fibromata "The presence of fibromata beneath finger or toenails." [HPO:curators]
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 HP:0009727 Achromatic retinal patches "Areas of the retina lacking pigmentation." [HPO:curators]
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 HP:0009729 Cardiac rhabdomyoma "A benign tumor of cardiac striated muscle." [HPO:curators]
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 HP:0009734 Optic glioma "A glioma originating in the optic nerves or chiasm." [HPO:curators]
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 HP:0010310 Chylothorax "Accumulation of excessive amounts of lymphatic fluid (chyle) in the pleural cavity." [HPO:curators]
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 HP:0010609 Skin tags 
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 HP:0010615 Angiofibromas "Angiofibroma consist of many often dilated vessels." [HPO:curators]
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 HP:0010762 Chordoma "A chordoma is a tumors that arises from embryonic remnants of the `notochord` (FMA:85521) along the length of the neuraxis. Chordomas generally occur in the sacrum, intracranially at the clivus, or along the spinal axis." [HPO:probinson]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0011852 Chylopericardium "Accumulation of chyle (the whitish fluid taken up by the lacteals in the intestine, consisting of an emulsion of lymph and triglyceride fat thatpasses into the veins by the thoracic duct) in the pericardium. Chylopericardium is generally caused by obstruction of or trauma to the thoracic duct." [HPO:probinson]
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 HP:0012086 Abnormal urinary color "An abnormal color of the urine, that is, the color of the urine appears different from the usual straw-yellow color." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012469 Infantile spasms "Infantile spasms represent a subset of "epileptic spasms". Infantile Spasms are epileptic spasms starting in the first year of life (infancy)." [HPO:ihelbig]
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 HP:0012733 Macule "A flat, distinct, discolored area of skin less than 1 cm wide that does not involve any change in the thickness or texture of the skin." [HPO:probinson]
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 HP:0012735 Cough "A sudden, audible expulsion of air from the lungs through a partially closed glottis, preceded by inhalation." [HPO:probinson]
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 HP:0012798 Pulmonary lymphangiomyomatosis "Infiltration of smooth muscle-like cells in lymph vessels as well as the lung (pleura, alveolar septa, bronchi, pulmonary vessels and lymphatics as well as lymph nodes, especially in posterior mediastinum and retroperitoneum). Focal emphysema can develop because of airway narrowing, and the thoracic duct may be obliterated. Pulmonary lymphangiomyomatosis may lead to multiple small cysts with a hamartomatous proliferation of smooth muscle in their walls." [HPO:probinson]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0100749 Chest pain 
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 HP:0100750 Atelectasis 
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 HP:0100804 Ungual fibroma "Flesh-colored papule in or around the nail bed. Ungual fibromas may be periungual (arising under the proximal nail fold ) or subungual (originating under the nail plate)." [HPO:probinson, pmid:18815399]
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 HP:0200024 Premature chromatid separation "The presence of `premature` (PATO:0000694) `sister chromatid segregation` (GO:0000819)." [HPO:probinson]
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 HP:0200034 skin papules "A circumscribed, solid elevation of skin with no visible fluid, varying in size from a pinhead to less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000103197 TSC2 / P49815 / TSC complex subunit 2  / complex / reaction
 ENSG00000111725 PRKAB1 / Q9Y478 / protein kinase AMP-activated non-catalytic subunit beta 1  / reaction
 ENSG00000131791 O43741 / PRKAB2 / protein kinase AMP-activated non-catalytic subunit beta 2  / reaction
 ENSG00000115592 PRKAG3 / Q9UGI9 / protein kinase AMP-activated non-catalytic subunit gamma 3  / reaction
 ENSG00000106617 PRKAG2 / Q9UGJ0 / protein kinase AMP-activated non-catalytic subunit gamma 2  / reaction
 ENSG00000145979 Q9P0N9 / TBC1D7 / TBC1 domain family member 7  / reaction / complex
 ENSG00000132356 PRKAA1 / Q13131 / protein kinase AMP-activated catalytic subunit alpha 1  / reaction
 ENSG00000105221 AKT2 / P31751 / AKT serine/threonine kinase 2  / reaction
 ENSG00000181929 P54619 / PRKAG1 / protein kinase AMP-activated non-catalytic subunit gamma 1  / reaction
 ENSG00000162409 P54646 / PRKAA2 / protein kinase AMP-activated catalytic subunit alpha 2  / reaction






 

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