ENSG00000168685


Homo sapiens

Features
Gene ID: ENSG00000168685
  
Biological name :IL7R
  
Synonyms : IL7R / interleukin 7 receptor / P16871
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: p13.2
Gene start: 35852695
Gene end: 35879603
  
Corresponding Affymetrix probe sets: 205798_at (Human Genome U133 Plus 2.0 Array)   226218_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000306157
Ensembl peptide - ENSP00000421207
Ensembl peptide - ENSP00000427688
Ensembl peptide - ENSP00000426426
Ensembl peptide - ENSP00000426069
Ensembl peptide - ENSP00000425538
Ensembl peptide - ENSP00000425309
NCBI entrez gene - 3575     See in Manteia.
OMIM - 146661
RefSeq - NM_002185
RefSeq - XM_005248299
RefSeq Peptide - NP_002176
swissprot - D6RCR9
swissprot - B8YG18
swissprot - D6RGV2
swissprot - P16871
swissprot - H0YA41
swissprot - D6RG28
swissprot - D6RDM4
Ensembl - ENSG00000168685
  
Related genetic diseases (OMIM): 608971 - Severe combined immunodeficiency, T-cell negative, B-cell/natural killer cell-positive type, 608971
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 il7rENSDARG00000078970Danio rerio
 IL7RENSGALG00000013372Gallus gallus
 Il7rENSMUSG00000003882Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003531  Short hematopoietin receptor, family 1, conserved site
 IPR003961  Fibronectin type III
 IPR013783  Immunoglobulin-like fold
 IPR036116  Fibronectin type III superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000018 regulation of DNA recombination TAS
 biological_processGO:0000902 cell morphogenesis IEA
 biological_processGO:0001915 negative regulation of T cell mediated cytotoxicity IEA
 biological_processGO:0002377 immunoglobulin production IEA
 biological_processGO:0006955 immune response TAS
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007166 cell surface receptor signaling pathway TAS
 biological_processGO:0008284 positive regulation of cell proliferation IDA
 biological_processGO:0008361 regulation of cell size IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0019221 cytokine-mediated signaling pathway IEA
 biological_processGO:0030217 T cell differentiation IEA
 biological_processGO:0033089 positive regulation of T cell differentiation in thymus IEA
 biological_processGO:0038111 interleukin-7-mediated signaling pathway TAS
 biological_processGO:0042100 B cell proliferation IEA
 biological_processGO:0048535 lymph node development IEA
 biological_processGO:0048872 homeostasis of number of cells IEA
 biological_processGO:0061024 membrane organization TAS
 biological_processGO:1904894 positive regulation of STAT cascade IDA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0009897 external side of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030665 clathrin-coated vesicle membrane TAS
 molecular_functionGO:0003823 antigen binding TAS
 molecular_functionGO:0004896 cytokine receptor activity IEA
 molecular_functionGO:0004917 interleukin-7 receptor activity TAS
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Interleukin-7 signaling
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000100 Nephrotic syndrome 
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 HP:0000155 Oral ulcers 
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 HP:0000388 Otitis media 
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 HP:0000821 Hypothyroidism 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0000958 Dry skin 
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001019 Erythroderma "An inflammatory exfoliative dermatosis involving nearly all of the surface of the skin. Erythroderma develops suddenly. A patchy erythema may generalize and spread to affect most of the skin. Scaling may appear in 2-6 days and be accompanied by hot, red, dry skin, malaise, and fever." [HPO:probinson]
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 HP:0001072 Thickened skin 
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 HP:0001508 Failure to thrive 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001831 Brachydactyly (feet) 
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 HP:0001880 Eosinophilia "Increased count of eosinophile granulocytes in the blood." [HPO:sdoelken]
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 HP:0001903 Anemia 
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 HP:0001945 Fever 
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 HP:0002014 Diarrhea 
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 HP:0002028 Chronic diarrhea 
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 HP:0002090 Pneumonia 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0002960 Autoimmune disease 
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 HP:0004332 Abnormality of lymphocytes 
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 HP:0004430 Severe combined immunodeficiency "Severe combine immunodeficiency (SCID) is a primary immune deficiency that is characterized by a severe defect in both the T- and B-lymphocyte systems." [HPO:curators]
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 HP:0005390 Frequent bacterial, viral, and opportunistic infections 
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 HP:0005403 Reduced number of T cells 
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 HP:0007549 Desquamation of skin soon after birth 
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 HP:0008866 Failure to thrive secondary to recurrent infections 
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 HP:0100646 Thyroiditis "`Inflammation` (MPATH:212) of the `thyroid gland` (FMA:9603)." [HPO:probinson]
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 HP:0100806 Sepsis 
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 HP:0100840 Aplasia/Hypoplasia of the eyebrow "Absence or underdevelopment of the eyebrow." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000104432 IL7 / P13232 / interleukin 7  / complex / reaction
 ENSG00000168610 STAT3 / P40763 / signal transducer and activator of transcription 3  / complex
 ENSG00000147168 IL2RG / P31785 / interleukin 2 receptor subunit gamma  / reaction / complex
 ENSG00000173757 P51692 / STAT5B / signal transducer and activator of transcription 5B  / complex
 ENSG00000169047 IRS1 / P35568 / insulin receptor substrate 1  / complex
 ENSG00000145777 TSLP / Q969D9 / thymic stromal lymphopoietin  / complex
 ENSG00000162434 JAK1 / P23458 / Janus kinase 1  / reaction / complex
 ENSG00000205755 CRLF2 / Q9HC73 / cytokine receptor like factor 2  / complex
 ENSG00000126561 P42229 / STAT5A / signal transducer and activator of transcription 5A  / complex
 ENSG00000185950 IRS2 / Q9Y4H2 / insulin receptor substrate 2  / complex
 ENSG00000105639 JAK3 / P52333 / Janus kinase 3  / complex / reaction






 

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