ENSG00000197283


Homo sapiens

Features
Gene ID: ENSG00000197283
  
Biological name :SYNGAP1
  
Synonyms : Q96PV0 / synaptic Ras GTPase activating protein 1 / SYNGAP1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: p21.32
Gene start: 33419661
Gene end: 33457541
  
Corresponding Affymetrix probe sets: 226163_at (Human Genome U133 Plus 2.0 Array)   230297_x_at (Human Genome U133 Plus 2.0 Array)   234285_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000486431
Ensembl peptide - ENSP00000486463
Ensembl peptide - ENSP00000496007
Ensembl peptide - ENSP00000495541
Ensembl peptide - ENSP00000494861
Ensembl peptide - ENSP00000490803
Ensembl peptide - ENSP00000489938
Ensembl peptide - ENSP00000293748
Ensembl peptide - ENSP00000403636
Ensembl peptide - ENSP00000412475
Ensembl peptide - ENSP00000416519
NCBI entrez gene - 8831     See in Manteia.
OMIM - 603384
RefSeq - NM_006772
RefSeq Peptide - NP_006763
swissprot - A0A1B0GW70
swissprot - A0A1B0GU28
swissprot - A0A0A0MQZ2
swissprot - B7ZCA0
swissprot - Q96PV0
swissprot - A0A1U9X8L0
Ensembl - ENSG00000197283
  
Related genetic diseases (OMIM): 612621 - Mental retardation, autosomal dominant 5, 612621
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 syngap1aENSDARG00000063713Danio rerio
 syngap1bENSDARG00000069765Danio rerio
 F6SEU4ENSMUSG00000067629Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DAB2IP / Q5VWQ8 / DAB2 interacting proteinENSG0000013684845
Q9UJF2 / RASAL2 / RAS protein activator like 2ENSG0000007539144
Q86YV0 / RASAL3 / RAS protein activator like 3ENSG0000010512224
RASA1 / P20936 / RAS p21 protein activator 1ENSG0000014571513
O95294 / RASAL1 / RAS protein activator like 1ENSG0000011134413
C9J798 / RASA4B / RAS p21 protein activator 4BENSG0000017066712
RASA3 / Q14644 / RAS p21 protein activator 3ENSG0000018598912
RASA2 / Q15283 / RAS p21 protein activator 2ENSG0000015590312
RASA4 / O43374 / RAS p21 protein activator 4ENSG0000010580812


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR001849  Pleckstrin homology domain
 IPR001936  Ras GTPase-activating domain
 IPR008936  Rho GTPase activation protein
 IPR011993  PH-like domain superfamily
 IPR021887  Domain of unknown function DUF3498
 IPR023152  Ras GTPase-activating protein, conserved site
 IPR023315  SynGAP C2 domain, N-terminal
 IPR035892  C2 domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000165 MAPK cascade TAS
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007265 Ras protein signal transduction IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0008542 visual learning IEA
 biological_processGO:0016358 dendrite development IEA
 biological_processGO:0043087 regulation of GTPase activity IEA
 biological_processGO:0043113 receptor clustering IEA
 biological_processGO:0043408 regulation of MAPK cascade IEA
 biological_processGO:0043524 negative regulation of neuron apoptotic process IEA
 biological_processGO:0043547 positive regulation of GTPase activity IEA
 biological_processGO:0046580 negative regulation of Ras protein signal transduction ISS
 biological_processGO:0048167 regulation of synaptic plasticity ISS
 biological_processGO:0048169 regulation of long-term neuronal synaptic plasticity IEA
 biological_processGO:0050771 negative regulation of axonogenesis IEA
 biological_processGO:0050803 regulation of synapse structure or activity IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0014069 postsynaptic density IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031235 intrinsic component of the cytoplasmic side of the plasma membrane IBA
 cellular_componentGO:0043198 dendritic shaft IEA
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0017124 SH3 domain binding IEA


Pathways (from Reactome)
Pathway description
Regulation of RAS by GAPs
Signaling by RAS mutants


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000473 Torticollis 
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 HP:0000729 Pervasive developmental disorder 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002376 Developmental regression 
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 HP:0002463 Language impairment 
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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