ENSG00000203883


Homo sapiens

Features
Gene ID: ENSG00000203883
  
Biological name :SOX18
  
Synonyms : P35713 / SOX18 / SRY-box 18
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: -1
Band: q13.33
Gene start: 64047582
Gene end: 64049641
  
Corresponding Affymetrix probe sets: 219568_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000341815
NCBI entrez gene - 54345     See in Manteia.
OMIM - 601618
RefSeq - NM_018419
RefSeq Peptide - NP_060889
swissprot - P35713
Ensembl - ENSG00000203883
  
Related genetic diseases (OMIM): 137940 - Hypotrichosis-lymphedema-telangiectasia-renal defect syndrome, 137940
  607823 - Hypotrichosis-lymphedema-telangiectasia syndrome, 607823

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sox18ENSDARG00000058598Danio rerio
 SOX18ENSGALG00000034118Gallus gallus
 Sox18ENSMUSG00000046470Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SOX17 / Q9H6I2 / SRY-box 17ENSG0000016473643
SOX7 / Q9BT81 / SRY-box 7ENSG0000017105642
AC105001.2ENSG0000025872432
SOX9 / P48436 / SRY-box 9ENSG0000012539827
SOX8 / P57073 / SRY-box 8ENSG0000000551324
SOX10 / P56693 / SRY-box 10ENSG0000010014624
SOX3 / P41225 / SRY-box 3ENSG0000013459522
SOX1 / O00570 / SRY-box 1ENSG0000018296822
SOX11 / P35716 / SRY-box 11ENSG0000017688721
SOX4 / Q06945 / SRY-box 4ENSG0000012476620
SOX2 / P48431 / SRY-box 2ENSG0000018144919
SOX15 / O60248 / SRY-box 15ENSG0000012919419
SOX12 / O15370 / SRY-box 12ENSG0000017773217
SOX14 / O95416 / SRY-box 14ENSG0000016887515
SOX21 / Q9Y651 / SRY-box 21ENSG0000012528514
SRY / Q05066 / sex determining region YENSG0000018489514


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR021934  Sox, C-terminal
 IPR033392  Sox 7/17/18, central domain
 IPR036910  High mobility group box domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0001568 blood vessel development IEA
 biological_processGO:0001570 vasculogenesis IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0001942 hair follicle development IEA
 biological_processGO:0001944 vasculature development IEA
 biological_processGO:0001945 lymph vessel development IEA
 biological_processGO:0001946 lymphangiogenesis IMP
 biological_processGO:0001947 heart looping ISS
 biological_processGO:0003151 outflow tract morphogenesis ISS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0022405 hair cycle process IMP
 biological_processGO:0035050 embryonic heart tube development IEA
 biological_processGO:0042789 mRNA transcription by RNA polymerase II IDA
 biological_processGO:0043534 blood vessel endothelial cell migration IEP
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0048469 cell maturation IEA
 biological_processGO:0048866 stem cell fate specification IEA
 biological_processGO:0060214 endocardium formation IEA
 biological_processGO:0060836 lymphatic endothelial cell differentiation IEA
 biological_processGO:0060956 endocardial cell differentiation IEA
 biological_processGO:0061028 establishment of endothelial barrier IMP
 biological_processGO:0072091 regulation of stem cell proliferation IEA
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0044798 nuclear transcription factor complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000034 Hydrocele 
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000300 Oval face 
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000535 Sparse eyebrows 
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 HP:0000561 Absent eyelashes "Lack of eyelashes." [HPO:curators]
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 HP:0000653 Sparse eyelashes "Decreased density/number of eyelashes." [pmid:19125427]
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 HP:0000793 Membranoproliferative glomerulonephritis 
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 HP:0000963 Thin skin 
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 HP:0000965 Cutis marmorata 
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 HP:0001004 Lymphedema 
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 HP:0001006 Hypotrichosis "Reduced or lacking hair growth." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001541 Ascites 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001597 Abnormality of the nails "Abnormality of the fingernails or toenails." [HPO:curators]
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 HP:0001789 Hydrops fetalis 
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 HP:0001790 Nonimmune hydrops fetalis 
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 HP:0002202 Pleural effusion "The presence of an excessive amount of fluid in the pleural cavity." [HPO:curators]
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 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
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 HP:0002223 Absent eyebrows 
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 HP:0002231 Sparse body hair "Sparseness of the body hair." [HPO:probinson]
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 HP:0003189 Long nose 
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 HP:0003550 Lymphedema, predominantly in the lower limbs 
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 HP:0003577 Onset at birth 
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 HP:0003676 Progressive disorder 
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 HP:0003758 Reduced subcutaneous adipose tissue "The presence of an abnormally reduced amount of subcutaneous adipose tissue." [HPO:curators]
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 HP:0004334 Dermal atrophy "Partial or complete wasting (atrophy) of the skin." [HPO:curators]
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 HP:0005598 Facial telangiectasia in butterfly midface distribution "Telangiectases (small dilated blood vessels) located near the surface of the skin in a butterfly midface distribution." [HPO:curators]
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 HP:0006521 Pulmonary lymphangiectasia "Abnormal dilatation of the pulmonary lymphatic vessels. Lymphatic fluid in the lung is derived from normal leakage of fluid out of the blood capillaries in the lung. In pulmonary lymphangiectasia, the pulmonary lymphatics are not properly connected and become dilated with fluid." [HPO:curators]
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 HP:0007543 Epidermal hyperkeratosis 
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 HP:0007621 Telangiectasia of extensor surfaces 
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 HP:0012471 Thick vermilion border "Increased width of the "skin of vermilion border region of upper lip" (FMA:312645)." [HPO:probinson]
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 HP:0012622 Chronic kidney disease "Functional anomaly of the kidney persisting for at least three months." [Eurenomics:ewuehl]
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 HP:0100540 Palpebral edema 
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 HP:0100763 Abnormality of the lymphatic system 
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 HP:0100869 Palmar telangiectasia "The presence of telangiectases on the `skin of palm of hand` (FMA:38301)." [HPO:probinson]
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 HP:0100870 Plantar telangiectasia "Telangiectases (small dilated blood vessels) located on the `skin of sole of foot` (FMA:37849)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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