ENSG00000100146


Homo sapiens

Features
Gene ID: ENSG00000100146
  
Biological name :SOX10
  
Synonyms : P56693 / SOX10 / SRY-box 10
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: -1
Band: q13.1
Gene start: 37970686
Gene end: 37987422
  
Corresponding Affymetrix probe sets: 209842_at (Human Genome U133 Plus 2.0 Array)   209843_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000380093
Ensembl peptide - ENSP00000414853
Ensembl peptide - ENSP00000399777
Ensembl peptide - ENSP00000354130
NCBI entrez gene - 6663     See in Manteia.
OMIM - 602229
RefSeq - NM_006941
RefSeq Peptide - NP_008872
swissprot - A6PVD3
swissprot - A0A024R1N6
swissprot - H0Y5N4
swissprot - P56693
Ensembl - ENSG00000100146
  
Related genetic diseases (OMIM): 609136 - PCWH syndrome, 609136
  611584 - Waardenburg syndrome, type 2E, with or without neurologic involvement, 611584
  613266 - Waardenburg syndrome, type 4C, 613266

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sox10ENSDARG00000077467Danio rerio
 SOX10ENSGALG00000012290Gallus gallus
 Sox10ENSMUSG00000033006Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SOX9 / P48436 / SRY-box 9ENSG0000012539857
SOX8 / P57073 / SRY-box 8ENSG0000000551346
SOX17 / Q9H6I2 / SRY-box 17ENSG0000016473621
SOX7 / Q9BT81 / SRY-box 7ENSG0000017105620
SOX18 / P35713 / SRY-box 18ENSG0000020388320
SOX4 / Q06945 / SRY-box 4ENSG0000012476620
SOX11 / P35716 / SRY-box 11ENSG0000017688719
SOX3 / P41225 / SRY-box 3ENSG0000013459519
SOX15 / O60248 / SRY-box 15ENSG0000012919417
SOX1 / O00570 / SRY-box 1ENSG0000018296817
SOX2 / P48431 / SRY-box 2ENSG0000018144917
SOX12 / O15370 / SRY-box 12ENSG0000017773216
AC105001.2ENSG0000025872414
SOX14 / O95416 / SRY-box 14ENSG0000016887514
SOX21 / Q9Y651 / SRY-box 21ENSG0000012528514
SRY / Q05066 / sex determining region YENSG0000018489512


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR022151  Sox developmental protein N-terminal
 IPR036910  High mobility group box domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II TAS
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter IEA
 biological_processGO:0009653 anatomical structure morphogenesis TAS
 biological_processGO:0010626 negative regulation of Schwann cell proliferation IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0014003 oligodendrocyte development ISS
 biological_processGO:0022010 central nervous system myelination ISS
 biological_processGO:0031643 positive regulation of myelination IEA
 biological_processGO:0035690 cellular response to drug IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated ISS
 biological_processGO:0048709 oligodendrocyte differentiation ISS
 biological_processGO:0048863 stem cell differentiation IEA
 biological_processGO:0071393 cellular response to progesterone stimulus IEA
 cellular_componentGO:0000785 chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005741 mitochondrial outer membrane IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity ISS
 molecular_functionGO:0003713 transcription coactivator activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:1990841 promoter-specific chromatin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
Show

 HP:0000044 Hypogonadotrophic hypogonadism "Hypogonadotropic hypogonadism is characterized by reduced function of the gonads (testes in males or ovaries in females) and results from the absence of the gonadal stimulating pituitary hormones: follicle stimulating hormone (FSH) and luteinizing hormone (LH)." [HPO:curators]
Show

 HP:0000054 Micropenis 
Show

 HP:0000077 Abnormality of the kidneys "An abnormality of the kidneys, the paired organs whose primary function is the production of urine." [HPO:curators]
Show

 HP:0000104 Renal agenesis 
Show

 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
Show

 HP:0000144 Decreased fertility 
Show

 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
Show

 HP:0000365 Hearing loss 
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000426 Prominent nasal bridge 
Show

 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
Show

 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
Show

 HP:0000458 Anosmia "An inability to perceive odors. This is a general term describing inability to smell arising in any part of the process of smelling from absorption of odorants into the nasal mucous overlying the olfactory epithelium, diffusion to the cilia, binding to olfactory receptor sites, generation of action potentials in olfactory neurons, and perception of a smell." [HPO:curators]
Show

 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
Show

 HP:0000505 Impaired vision 
Show

 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
Show

 HP:0000522 Alacrima 
Show

 HP:0000534 Abnormality of the eyebrow "An abnormality of the `eyebrow` (FMA:54237)." [HPO:probinson]
Show

 HP:0000551 Abnormal color vision 
Show

 HP:0000633 Decreased lacrimation 
Show

 HP:0000635 Blue irides 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
Show

 HP:0000762 Decreased nerve conduction velocities 
Show

 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
Show

 HP:0000771 Gynecomastia 
Show

 HP:0000786 Primary amenorrhea 
Show

 HP:0000823 Delayed puberty 
Show

 HP:0000830 Hypopituitarism "A condition of reduced function of the pituitary gland characterized by decreased secretion of one or more of the eight pituitary hormones." [HPO:curators]
Show

 HP:0000957 Cafe-au-lait spots 
Show

 HP:0000966 Hypohidrosis "Abnormally diminished capacity to sweat." [HPO:curators]
Show

 HP:0001053 Hypopigmented skin patches 
Show

 HP:0001100 Heterochromia iridis "Heterochromia iridis is a difference in the color of the iris in the two eyes." [HPO:curators]
Show

 HP:0001103 Abnormality of the macula 
Show

 HP:0001107 Ocular albinism 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
Show

 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001265 Hyporeflexia 
Show

 HP:0001276 Hypertonia 
Show

 HP:0001284 Areflexia 
Show

 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
Show

 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
Show

 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
Show

 HP:0001335 Mirror hand movements (bimanual synkinesia) 
Show

 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
Show

 HP:0001341 Olfactory lobe agenesis 
Show

 HP:0001425 Heterogeneous 
Show

 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
Show

 HP:0001608 Abnormality of the voice "Any abnormality of the voice." [HPO:curators]
Show

 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
Show

 HP:0001761 Pes cavus 
Show

 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
Show

 HP:0002019 Constipation 
Show

 HP:0002027 Abdominal pain 
Show

 HP:0002211 White forelock 
Show

 HP:0002216 Premature graying of hair 
Show

 HP:0002226 White eyebrows 
Show

 HP:0002227 White eyelashes 
Show

 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
Show

 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
Show

 HP:0002271 Autonomic dysregulation 
Show

 HP:0002313 Spastic paraparesis 
Show

 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
Show

 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
Show

 HP:0002595 Ileus "Acute obstruction of the intestines preventing passage of the contents of the intestines." [HPO:sdoelken]
Show

 HP:0002652 Skeletal dysplasia 
Show

 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
Show

 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
Show

 HP:0002804 Arthrogryposis multiplex congenita 
Show

 HP:0002936 Distal sensory impairment 
Show

 HP:0003164 Hypothalamic gonadotropin-releasing hormone (GNRH) deficiency 
Show

 HP:0003187 Breast hypoplasia 
Show

 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
Show

 HP:0003812 Phenotypic variability 
Show

 HP:0004336 Myelin outfoldings 
Show

 HP:0004349 Reduced bone mineral density "A reduction of bone mineral density, that is, of the amount of matter per cubic centimeter of bones." [HPO:curators]
Show

 HP:0004388 Microcolon 
Show

 HP:0004409 Hyposmia "A decreased sensitivity to odorants (that is, a decreased ability to perceive odors)." [HPO:curators]
Show

 HP:0004414 Abnormality of the pulmonary artery 
Show

 HP:0004463 absent brainstem auditory responses 
Show

 HP:0005214 Intestinal obstruction 
Show

 HP:0005599 Hair hypopigmentation 
Show

 HP:0006808 Hypomyelination of the brain 
Show

 HP:0006978 Dysmyelinating leukodystrophy 
Show

 HP:0007108 Demyelinating peripheral neuropathy 
Show

 HP:0007182 Hypomyelination on nerve biopsy 
Show

 HP:0007256 Mild pyramidal signs 
Show

 HP:0007266 Dysmyelination of the brain 
Show

 HP:0007676 Hypoplasia of the iris 
Show

 HP:0007703 Abnormal retinal pigmentation 
Show

 HP:0007732 Hypoplastic lacrimal gland 
Show

 HP:0007894 Hypopigmentation of the fundus 
Show

 HP:0008064 Ichthyosiform abnormality of the skin 
Show

 HP:0008734 Decreased testicular size 
Show

 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
Show

 HP:0009804 Reduced number of teeth 
Show

 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
Show

 HP:0010550 Paraplegia "Severe or complete weakness of both lower extremities with sparing of the upper extremities." [HPO:curators]
Show

 HP:0011096 Peripheral demyelination "A loss of myelin from the internode regions along myelinated nerve fibers of the peripheral nervous system." [HPO:probinson]
Show

 HP:0011285 Long-segment aganglionic megacolon "A type of aganglionic megacolon in which the aganglionic segment extends proximal to the sigmoid." [HPO:probinson]
Show

 HP:0011379 Dilated vestibule of the inner ear "Dilatation of the vestibule of the inner ear." [DDD:mbitner-glidicz]
Show

 HP:0011381 Aplasia of the semicircular canal "Absence of the semicircular canal." [DDD:dfitzpatrick]
Show

 HP:0011382 Hypoplasia of the semicircular canal "Underdevelopment of the semicircular canal." [DDD:dfitzpatrick]
Show

 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
Show

 HP:0030016 Dyspareunia "Recurrent or persistent genital pain associated with sexual intercourse." []
Show

 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
Show

 HP:0100639 Erectile abnormalities 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr