ENSG00000215301


Homo sapiens

Features
Gene ID: ENSG00000215301
  
Biological name :DDX3X
  
Synonyms : DDX3X / DEAD-box helicase 3, X-linked / O00571
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: p11.4
Gene start: 41333284
Gene end: 41364472
  
Corresponding Affymetrix probe sets: 1558120_at (Human Genome U133 Plus 2.0 Array)   201210_at (Human Genome U133 Plus 2.0 Array)   201211_s_at (Human Genome U133 Plus 2.0 Array)   207617_at (Human Genome U133 Plus 2.0 Array)   212514_x_at (Human Genome U133 Plus 2.0 Array)   212515_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000495377
Ensembl peptide - ENSP00000496663
Ensembl peptide - ENSP00000496524
Ensembl peptide - ENSP00000496356
Ensembl peptide - ENSP00000496257
Ensembl peptide - ENSP00000496222
Ensembl peptide - ENSP00000496076
Ensembl peptide - ENSP00000496052
Ensembl peptide - ENSP00000496043
Ensembl peptide - ENSP00000382840
Ensembl peptide - ENSP00000392494
Ensembl peptide - ENSP00000414281
Ensembl peptide - ENSP00000478443
Ensembl peptide - ENSP00000479790
Ensembl peptide - ENSP00000480647
Ensembl peptide - ENSP00000486306
Ensembl peptide - ENSP00000486443
Ensembl peptide - ENSP00000486514
Ensembl peptide - ENSP00000486516
Ensembl peptide - ENSP00000486720
Ensembl peptide - ENSP00000487062
Ensembl peptide - ENSP00000487224
Ensembl peptide - ENSP00000487626
Ensembl peptide - ENSP00000493475
Ensembl peptide - ENSP00000493687
Ensembl peptide - ENSP00000493795
Ensembl peptide - ENSP00000493819
Ensembl peptide - ENSP00000493976
Ensembl peptide - ENSP00000493997
Ensembl peptide - ENSP00000494040
Ensembl peptide - ENSP00000494518
Ensembl peptide - ENSP00000494588
Ensembl peptide - ENSP00000494767
Ensembl peptide - ENSP00000494887
Ensembl peptide - ENSP00000494905
Ensembl peptide - ENSP00000494952
Ensembl peptide - ENSP00000495264
NCBI entrez gene - 1654     See in Manteia.
OMIM - 300160
RefSeq - XM_017029314
RefSeq - NM_001193416
RefSeq - NM_001193417
RefSeq - NM_001356
RefSeq - XM_011543892
RefSeq - XM_017029313
RefSeq Peptide - NP_001180346
RefSeq Peptide - NP_001347
RefSeq Peptide - NP_001180345
swissprot - A0A0D9SG12
swissprot - A0A0D9SFB3
swissprot - A0A0D9SF53
swissprot - A0A087WX09
swissprot - A0A0J9YVQ7
swissprot - A0A087WVZ1
swissprot - O00571
swissprot - B4DLA0
Ensembl - ENSG00000215301
  
Related genetic diseases (OMIM): 300958 - Mental retardation, X-linked 102, 300958
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx3aENSDARG00000020573Danio rerio
 ddx3bENSDARG00000005774Danio rerio
 DDX3XENSGALG00000016231Gallus gallus
 Ddx3xENSMUSG00000000787Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DDX3Y / O15523 / DEAD-box helicase 3, Y-linkedENSG0000006704892
DDX4 / Q9NQI0 / DEAD-box helicase 4ENSG0000015267043
DDX41 / Q9UJV9 / DEAD-box helicase 41ENSG0000018325830
DDX59 / Q5T1V6 / DEAD-box helicase 59ENSG0000011819725
DDX1 / Q92499 / DEAD-box helicase 1ENSG0000007978521


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006413 translational initiation IMP
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0007059 chromosome segregation IMP
 biological_processGO:0008625 extrinsic apoptotic signaling pathway via death domain receptors IMP
 biological_processGO:0009615 response to virus IDA
 biological_processGO:0010501 RNA secondary structure unwinding IDA
 biological_processGO:0010628 positive regulation of gene expression IDA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0016055 Wnt signaling pathway IMP
 biological_processGO:0017148 negative regulation of translation IMP
 biological_processGO:0030307 positive regulation of cell growth IMP
 biological_processGO:0030308 negative regulation of cell growth IDA
 biological_processGO:0031333 negative regulation of protein complex assembly IDA
 biological_processGO:0032508 DNA duplex unwinding IEA
 biological_processGO:0032728 positive regulation of interferon-beta production TAS
 biological_processGO:0034063 stress granule assembly IDA
 biological_processGO:0035556 intracellular signal transduction IDA
 biological_processGO:0042254 ribosome biogenesis IEA
 biological_processGO:0042256 mature ribosome assembly IMP
 biological_processGO:0043065 positive regulation of apoptotic process IMP
 biological_processGO:0043066 negative regulation of apoptotic process IMP
 biological_processGO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process IMP
 biological_processGO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process IMP
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0045070 positive regulation of viral genome replication IMP
 biological_processGO:0045087 innate immune response IMP
 biological_processGO:0045727 positive regulation of translation IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0045948 positive regulation of translational initiation IMP
 biological_processGO:0071243 cellular response to arsenic-containing substance IDA
 biological_processGO:0071470 cellular response to osmotic stress IDA
 biological_processGO:0071651 positive regulation of chemokine (C-C motif) ligand 5 production TAS
 biological_processGO:0071902 positive regulation of protein serine/threonine kinase activity IDA
 biological_processGO:0090263 positive regulation of canonical Wnt signaling pathway IMP
 biological_processGO:0097193 intrinsic apoptotic signaling pathway IMP
 biological_processGO:1900087 positive regulation of G1/S transition of mitotic cell cycle IMP
 biological_processGO:1903608 protein localization to cytoplasmic stress granule IMP
 biological_processGO:2001243 negative regulation of intrinsic apoptotic signaling pathway IMP
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IMP
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005741 mitochondrial outer membrane IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005852 eukaryotic translation initiation factor 3 complex IDA
 cellular_componentGO:0010494 cytoplasmic stress granule IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IDA
 cellular_componentGO:0034774 secretory granule lumen TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:1904813 ficolin-1-rich granule lumen TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003924 GTPase activity IDA
 molecular_functionGO:0004003 ATP-dependent DNA helicase activity IDA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity TAS
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008134 transcription factor binding IDA
 molecular_functionGO:0008143 poly(A) binding IDA
 molecular_functionGO:0008190 eukaryotic initiation factor 4E binding IDA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016887 ATPase activity IDA
 molecular_functionGO:0017111 nucleoside-triphosphatase activity IDA
 molecular_functionGO:0031369 translation initiation factor binding IDA
 molecular_functionGO:0033592 RNA strand annealing activity IDA
 molecular_functionGO:0035613 RNA stem-loop binding IDA
 molecular_functionGO:0043024 ribosomal small subunit binding IDA
 molecular_functionGO:0043273 CTPase activity IDA
 molecular_functionGO:0043539 protein serine/threonine kinase activator activity IDA
 molecular_functionGO:0045296 cadherin binding IDA
 molecular_functionGO:0048027 mRNA 5"-UTR binding IDA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
Show

 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000365 Hearing loss 
Show

 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
Show

 HP:0000752 Hyperactivity 
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 HP:0000826 Precocious puberty "The onset of secondary sexual characteristics before a normal age. Although it is difficult to define normal age ranges because of the marked variation with which puberty begins in normal children, precocious puberty can be defined as the onset of puberty before the age of 8 years in girls or 9 years in boys." [HPO:curators]
Show

 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
Show

 HP:0001423 X-linked dominant inheritance "A mode of inheritance that is observed for dominant traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked dominant disorders tend to manifest very severely in affected males. The severity of manifestation in females may depend on the degree of skewed X inactivation." [HPO:curators]
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 HP:0001999 Facial dysmorphism 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0002119 Ventriculomegaly 
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 HP:0002136 Broad-based gait "An abnormal gait pattern in which persons stand and walk with their feet spaced widely apart. This is often a component of cerebellar ataxia." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0004325 Decreased body weight 
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 HP:0100660 Dyskinesis "A movement disorder which consists of effects including diminished voluntary movements and the presence of involuntary movements." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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