ENSGALG00000010053


Gallus gallus

Features
Gene ID: ENSGALG00000010053
  
Biological name :PTPRF
  
Synonyms : protein tyrosine phosphatase, receptor type F / PTPRF
  
Possible biological names infered from orthology : A2A8L5 / P10586 / Receptor-type tyrosine-protein phosphatase F
  
Species: Gallus gallus
  
Chr. number: 8
Strand: 1
Band:
Gene start: 19988821
Gene end: 20225336
  
Corresponding Affymetrix probe sets: Gga.12338.1.S1_at (Chicken Array)   Gga.18461.1.S1_s_at (Chicken Array)   Gga.5178.1.S1_at (Chicken Array)   GgaAffx.23111.1.S1_s_at (Chicken Array)   GgaAffx.23111.7.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000056226
Ensembl peptide - ENSGALP00000016318
Ensembl peptide - ENSGALP00000057545
Ensembl peptide - ENSGALP00000044728
Ensembl peptide - ENSGALP00000047018
Ensembl peptide - ENSGALP00000046831
NCBI entrez gene - 424568     See in Manteia.
RefSeq - XM_015291319
RefSeq - XM_015291313
RefSeq - XM_015291314
RefSeq - XM_015291315
RefSeq - XM_015291316
RefSeq - XM_015291317
RefSeq - XM_015291318
RefSeq - XM_015291308
RefSeq - XM_015291309
RefSeq - XM_015291311
RefSeq - XM_015291312
swissprot - A0A1D5PX53
swissprot - A0A1D5PTH8
swissprot - A0A1D5P2W7
swissprot - A0A1D5P2D6
swissprot - F1N897
swissprot - A0A1D5NWI8
Ensembl - ENSGALG00000010053
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 A4IFW2ENSDARG00000005754Danio rerio
 ptprfaENSDARG00000103479Danio rerio
 PTPRFENSG00000142949Homo sapiens
 PtprfENSMUSG00000033295Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PTPRD / protein tyrosine phosphatase, receptor type D / P23468* / Q64487*ENSGALG0000001505869
PTPRS / F1NWE3 / Receptor-type tyrosine-protein phosphatase S / B0V2N1* / Q13332* / protein tyrosine phosphatase, receptor type S*ENSGALG0000000404866
PTPRM / protein tyrosine phosphatase, receptor type M / P28827* / P28828*ENSGALG0000003128421
PTPRK / protein tyrosine phosphatase, receptor type K / P35822* / Q15262*ENSGALG0000003742320
PTPRT / protein tyrosine phosphatase, receptor type T / O14522* / Q99M80* / Receptor-type tyrosine-protein phosphatase T *ENSGALG0000003788920
PTPRU / receptor-type tyrosine-protein phosphatase U precursor / B1AUH1* / Q92729* / protein tyrosine phosphatase, receptor type U*ENSGALG0000003144020
PTPRZ1 / protein tyrosine phosphatase, receptor type Z1 / B9EKR1* / P23471* / protein tyrosine phosphatase, receptor type Z, polypeptide 1*ENSGALG0000004011420
PTPRG / receptor-type tyrosine-protein phosphatase gamma precursor / P23470* / protein tyrosine phosphatase, receptor type G* / receptor-type tyrosine-protein phosphatase gamma isoform 2 *ENSGALG0000000717718
PTPRA / protein tyrosine phosphatase, receptor type A / P18052* / P18433*ENSGALG0000001599517
PTPRE / protein tyrosine phosphatase, receptor type E / P23469* / P49446* / Receptor-type tyrosine-protein phosphatase epsilon *ENSGALG0000000982316
PTPRC / protein tyrosine phosphatase, receptor type CENSGALG0000000219216


Protein motifs (from Interpro)
Interpro ID Name
 IPR000242  PTP type protein phosphatase
 IPR000387  Tyrosine specific protein phosphatases domain
 IPR003595  Protein-tyrosine phosphatase, catalytic
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR016130  Protein-tyrosine phosphatase, active site
 IPR029021  Protein-tyrosine phosphatase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006470 protein dephosphorylation IEA
 biological_processGO:0010975 regulation of neuron projection development IEA
 biological_processGO:0016311 dephosphorylation IEA
 biological_processGO:0016477 cell migration IEA
 biological_processGO:0031102 neuron projection regeneration IEA
 biological_processGO:0035335 peptidyl-tyrosine dephosphorylation IEA
 biological_processGO:0048679 regulation of axon regeneration IEA
 biological_processGO:1900121 negative regulation of receptor binding IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 molecular_functionGO:0004721 phosphoprotein phosphatase activity IEA
 molecular_functionGO:0004725 protein tyrosine phosphatase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016791 phosphatase activity IEA
 molecular_functionGO:0035373 chondroitin sulfate proteoglycan binding IEA


Pathways (from Reactome)
Pathway description
Receptor-type tyrosine-protein phosphatases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr