ENSGALG00000020084


Gallus gallus

Features
Gene ID: ENSGALG00000020084
  
Biological name :CAPN13
  
Synonyms : calpain 13 / CAPN13
  
Possible biological names infered from orthology : Q3UW68 / Q6MZZ7
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 7870260
Gene end: 7906818
  
Corresponding Affymetrix probe sets: GgaAffx.5729.1.S1_at (Chicken Array)   GgaAffx.5730.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014743
NCBI entrez gene - 421304     See in Manteia.
RefSeq - XM_004940180
RefSeq - XM_015278132
swissprot - E1BRR5
Ensembl - ENSGALG00000020084
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-202f3.3ENSDARG00000052917Danio rerio
 si:ch211-202f3.4ENSDARG00000091723Danio rerio
 zgc:136872ENSDARG00000008553Danio rerio
 zgc:162184ENSDARG00000077217Danio rerio
 CAPN13ENSG00000162949Homo sapiens
 Capn13ENSMUSG00000043705Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CAPN14 / calpain 14 / A8MX76*ENSGALG0000000906937
CAPN11 / P00789 / Calpain-1 catalytic subunit / Q6J756* / Q9UMQ6* / calpain 11*ENSGALG0000001018636
CAPN3 / calpain 3 / P20807* / Q64691*ENSGALG0000000905035
CAPN2 / calpain-2 catalytic subunit precursor / O08529* / P17655* / calpain 2* / Calpain-2 catalytic subunit *ENSGALG0000000936035
CAPN5 / calpain 5 / O08688* / O15484*ENSGALG0000004047828
CAPN6 / calpain 6 / O35646* / Q9Y6Q1*ENSGALG0000000800626
CAPN8 / calpain 8 / A6NHC0* / Q91VA3*ENSGALG0000000938221


Protein motifs (from Interpro)
Interpro ID Name
 IPR000169  Cysteine peptidase, cysteine active site
 IPR001300  Peptidase C2, calpain, catalytic domain
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site
 IPR022682  Peptidase C2, calpain, large subunit, domain III
 IPR022683  Peptidase C2, calpain, domain III
 IPR022684  Peptidase C2, calpain family
 IPR029544  Calpain-13/Calpain-C


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0004198 calcium-dependent cysteine-type endopeptidase activity IBA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Degradation of the extracellular matrix


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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