ENSMUSG00000043705


Mus musculus

Features
Gene ID: ENSMUSG00000043705
  
Biological name :Capn13
  
Synonyms : Calpain-13 / Capn13 / Q3UW68
  
Possible biological names infered from orthology : Q6MZZ7
  
Species: Mus musculus
  
Chr. number: 17
Strand: -1
Band: E2
Gene start: 73306464
Gene end: 73399296
  
Corresponding Affymetrix probe sets: 10452770 (MoGene1.0st)   1437960_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000092832
NCBI entrez gene - 381122     See in Manteia.
MGI - MGI:2685789
RefSeq - NM_001033444
RefSeq - XM_017317548
RefSeq Peptide - NP_001028616
swissprot - Q3UW68
Ensembl - ENSMUSG00000043705
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-202f3.3ENSDARG00000052917Danio rerio
 si:ch211-202f3.4ENSDARG00000091723Danio rerio
 zgc:136872ENSDARG00000008553Danio rerio
 zgc:162184ENSDARG00000077217Danio rerio
 CAPN13ENSGALG00000020084Gallus gallus
 CAPN13ENSG00000162949Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Capn1 / O35350 / Calpain-1 catalytic subunit / P07384* / calpain 1*ENSMUSG0000002494235
Capn8 / Q91VA3 / Calpain-8 / A6NHC0*ENSMUSG0000003859933
Capn3 / Q64691 / Calpain-3 / P20807*ENSMUSG0000007911033
Capn11 / Q6J756 / Calpain-11 / Q9UMQ6*ENSMUSG0000005862632
Capn2 / O08529 / Calpain-2 catalytic subunit / P17655* / calpain 2*ENSMUSG0000002650932
Capn9 / Q9D805 / Calpain-9 / O14815*ENSMUSG0000003198131
Capn12 / calpain 12 / Q6ZSI9*ENSMUSG0000005408329
Capn5 / O08688 / Calpain-5 / O15484*ENSMUSG0000003554725
Capn6 / O35646 / Calpain-6 / Q9Y6Q1*ENSMUSG0000006727623


Protein motifs (from Interpro)
Interpro ID Name
 IPR000169  Cysteine peptidase, cysteine active site
 IPR001300  Peptidase C2, calpain, catalytic domain
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR022682  Peptidase C2, calpain, large subunit, domain III
 IPR022684  Peptidase C2, calpain family
 IPR029544  Calpain-13/Calpain-C
 IPR036213  Calpain large subunit, domain III superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0004198 calcium-dependent cysteine-type endopeptidase activity IBA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Degradation of the extracellular matrix


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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