ENSGALG00000029896


Gallus gallus

Features
Gene ID: ENSGALG00000029896
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : AC008695.1 / Q8TEU7 / RAPGEF6 / Rap guanine nucleotide exchange factor 6 / Rap guanine nucleotide exchange factor (GEF) 6
  
Species: Gallus gallus
  
Chr. number: 13
Strand: -1
Band:
Gene start: 16565634
Gene end: 16667942
  
Corresponding Affymetrix probe sets: GgaAffx.8586.1.S1_s_at (Chicken Array)   GgaAffx.8586.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000051337
Ensembl peptide - ENSGALP00000055716
Ensembl peptide - ENSGALP00000054400
Ensembl peptide - ENSGALP00000052121
Ensembl peptide - ENSGALP00000051956
Ensembl peptide - ENSGALP00000051873
NCBI entrez gene - 101751943     See in Manteia.
RefSeq - XM_015294088
RefSeq - XM_015294082
RefSeq - XM_015294083
RefSeq - XM_015294084
RefSeq - XM_015294085
RefSeq - XM_015294086
RefSeq - XM_015294087
RefSeq - XM_015294081
swissprot - A0A1D5PNF9
swissprot - A0A1D5PH44
swissprot - A0A1D5PGN3
swissprot - A0A1D5PGF1
swissprot - A0A1D5PEX5
swissprot - A0A1D5PS36
Ensembl - ENSGALG00000029896
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rapgef6ENSDARG00000010945Danio rerio
 AC008695.1ENSG00000273217Homo sapiens
 Q8TEU7ENSG00000158987Homo sapiens
 Rapgef6ENSMUSG00000037533Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAPGEF2 / Rap guanine nucleotide exchange factor 2 / Q8CHG7* / Q9Y4G8*ENSGALG0000002024966
RAPGEF4 / Rap guanine nucleotide exchange factor 4 / Q8WZA2* / Q9EQZ6* / Rap guanine nucleotide exchange factor (GEF) 4*ENSGALG0000004369415
RAPGEF3 / Rap guanine nucleotide exchange factor 3 / O95398* / Q8VCC8* / Mus musculus Rap guanine nucleotide exchange factor (GEF) 3 (Rapgef3), transcript variant 4, mRNA.*ENSGALG0000004377512
RAPGEF5 / Rap guanine nucleotide exchange factor 5 / Q8C0Q9* / Q92565*ENSGALG000000340249
RASGRP3 / RAS guanyl releasing protein 3 / Q8IV61*ENSGALG000000104358
RAPGEFL1 / Rap guanine nucleotide exchange factor like 1 / Q68EF8* / Q9UHV5*ENSGALG000000356907
RASGEF1C / RasGEF domain family member 1C / Q8N431* / Q9D300* / Ras-GEF domain-containing family member 1C *ENSGALG000000060766
RASGRP1 / RAS guanyl releasing protein 1 / O95267* / Q9Z1S3*ENSGALG000000097406
RASGEF1A / RasGEF domain family member 1A / Q8N9B8*ENSGALG000000025255
Q0VAM2* / Q8JZL7* / RASGEF1B* / RasGEF domain family member 1B* / Ras-GEF domain-containing family member 1B *ENSGALG000000109032


Protein motifs (from Interpro)
Interpro ID Name
 IPR000159  Ras-associating (RA) domain
 IPR000595  Cyclic nucleotide-binding domain
 IPR000651  Ras-like guanine nucleotide exchange factor, N-terminal
 IPR001478  PDZ domain
 IPR001895  Ras guanine-nucleotide exchange factors catalytic domain
 IPR014710  RmlC-like jelly roll fold
 IPR018490  Cyclic nucleotide-binding-like
 IPR023578  Ras guanine nucleotide exchange factor domain superfamily
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007264 small GTPase mediated signal transduction IEA
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0005085 guanyl-nucleotide exchange factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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