ENSMUSG00000023484


Mus musculus

Features
Gene ID: ENSMUSG00000023484
  
Biological name :Prph
  
Synonyms : peripherin / Prph
  
Possible biological names infered from orthology : P41219
  
Species: Mus musculus
  
Chr. number: 15
Strand: 1
Band: F1
Gene start: 99055174
Gene end: 99058978
  
Corresponding Affymetrix probe sets: 10426656 (MoGene1.0st)   1420256_x_at (Mouse Genome 430 2.0 Array)   1422530_at (Mouse Genome 430 2.0 Array)   1449796_at (Mouse Genome 430 2.0 Array)   1449797_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000024249
Ensembl peptide - ENSMUSP00000049303
Ensembl peptide - ENSMUSP00000155294
Ensembl peptide - ENSMUSP00000155819
NCBI entrez gene - 19132     See in Manteia.
MGI - MGI:97774
RefSeq - XM_006520632
RefSeq - NM_001163588
RefSeq - NM_001163589
RefSeq - NM_013639
RefSeq - XM_006520631
RefSeq Peptide - NP_001157060
RefSeq Peptide - NP_001157061
RefSeq Peptide - NP_038667
swissprot - G5E846
swissprot - G3X981
Ensembl - ENSMUSG00000023484
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prphENSDARG00000028306Danio rerio
 PRPHENSG00000135406Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Des / P31001 / Desmin / P17661*ENSMUSG0000002620854
Vim / P20152 / vimentin / P08670*ENSMUSG0000002672852
Gfap / P03995 / Glial fibrillary acidic protein / P14136*ENSMUSG0000002093244
Ina / P46660 / internexin neuronal intermediate filament protein, alpha / Q16352*ENSMUSG0000003433642
Nefl / P08551 / Neurofilament light polypeptide / P07196* / neurofilament light*ENSMUSG0000002205539
Nefm / neurofilament medium / P07197*ENSMUSG0000002205437
Nefh / P19246 / Neurofilament heavy polypeptide / P12036* / neurofilament heavy*ENSMUSG0000002039632
Lmna / P48678 / Prelamin-A/C Lamin-A/C / P02545* / lamin A/C*ENSMUSG0000002806326
Lmnb2 / P21619 / Lamin-B2 / Q03252*ENSMUSG0000006207525
Lmnb1 / P14733 / Lamin-B1 / P20700*ENSMUSG0000002459024


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR002957  Keratin, type I
 IPR006821  Intermediate filament head, DNA-binding domain
 IPR018039  Intermediate filament protein, conserved site
 IPR027700  Peripherin/Plasticin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005882 intermediate filament IEA
 cellular_componentGO:0045098 type III intermediate filament IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000965 abnormal sensory neuron morphology "malformation or absence of cells that innervate an effector (muscle or glandular) tissue; responsible for transmission of sensory impulses" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, MGI:CLS, J:60159]
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Allelic Composition: Chrna5tm1Mdb/Chrna5tm1Mdb,Chrnb4tm1Mdb/Chrnb4tm1Mdb
Genetic Background: B6.129-Chrnb4tm1Mdb Chrna5tm1Mdb

 MP:0005404 abnormal axon morphology "anomaly in the structure of the single process of a nerve cell that normally conducts impulses away from the cell body" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Chrna5tm1Mdb/Chrna5tm1Mdb,Chrnb4tm1Mdb/Chrnb4tm1Mdb
Genetic Background: B6.129-Chrnb4tm1Mdb Chrna5tm1Mdb

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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