ENSDARG00000028306


Danio rerio

Features
Gene ID: ENSDARG00000028306
  
Biological name :prph
  
Synonyms : peripherin / prph
  
Possible biological names infered from orthology : P41219
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 3320598
Gene end: 3334250
  
Corresponding Affymetrix probe sets: Dr.263.1.S1_at (Zebrafish Array)   Dr.263.1.S1_a_at (Zebrafish Array)   Dr.263.2.S1_at (Zebrafish Array)   Dr.263.2.S1_x_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000108086
Ensembl peptide - ENSDARP00000129087
NCBI entrez gene - 30259     See in Manteia.
RefSeq - NM_001319237
RefSeq Peptide - NP_001306166
swissprot - F1QT82
swissprot - Q502Q7
ZFIN ID - ZDB-GENE-990415-207
Ensembl - ENSDARG00000028306
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRPHENSG00000135406Homo sapiens
 PrphENSMUSG00000023484Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vim / vimentin / P08670* / P20152*ENSDARG0000001000854
desma / desmin a / DES* / desmin* / P17661* / P31001*ENSDARG0000005865653
desmb / desmin b / DES* / desmin* / P17661* / P31001*ENSDARG0000000522152
viml / vimentin like / VIM* / P08670* / vimentin*ENSDARG0000004450152
gfap / glial fibrillary acidic protein / P03995* / P14136*ENSDARG0000002530150
inaa / internexin neuronal intermediate filament protein, alpha a / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000001186245
inab / internexin neuronal intermediate filament protein, alpha b / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000005324844
zgc:65851ENSDARG0000001228143
nefla / neurofilament, light polypeptide a / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000005756839
neflb / neurofilament, light polypeptide b / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000001242638
nefmb / neurofilament, medium polypeptide b / NEFM* / P07197* / neurofilament medium*ENSDARG0000004369736
nefma / neurofilament, medium polypeptide a / NEFM* / P07197* / neurofilament medium*ENSDARG0000002135136
si:dkey-33c12.3ENSDARG0000005788135
ngs / notochord granular surfaceENSDARG0000005432134
zgc:172323ENSDARG0000005320133
si:dkey-27m7.4ENSDARG0000000314630
lmnb1 / lamin B1 / P14733* / P20700*ENSDARG0000004429926
lmnb2 / lamin B2 / P21619* / Q03252*ENSDARG0000010162426
lmna / lamin A / P02545* / P48678* / lamin A/C* / Prelamin-A/C Lamin-A/C*ENSDARG0000001341526
zgc:136930ENSDARG0000005519223


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR002957  Keratin, type I
 IPR006821  Intermediate filament head, DNA-binding domain
 IPR018039  Intermediate filament protein, conserved site
 IPR027700  Peripherin/Plasticin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042246 tissue regeneration IEP
 cellular_componentGO:0005882 intermediate filament IEA
 cellular_componentGO:0045098 type III intermediate filament IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr