ENSDARG00000012281


Danio rerio

Features
Gene ID: ENSDARG00000012281
  
Biological name :zgc:65851
  
Synonyms : zgc:65851
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 13671614
Gene end: 13685047
  
Corresponding Affymetrix probe sets: Dr.16886.1.A1_at (Zebrafish Array)   Dr.17194.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000012500
NCBI entrez gene - 321113     See in Manteia.
swissprot - Q7SZP4
ZFIN ID - ZDB-GENE-030131-9669
Ensembl - ENSDARG00000012281
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
inaa / internexin neuronal intermediate filament protein, alpha a / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000001186244
inab / internexin neuronal intermediate filament protein, alpha b / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000005324844
nefla / neurofilament, light polypeptide a / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000005756842
neflb / neurofilament, light polypeptide b / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000001242641
nefmb / neurofilament, medium polypeptide b / NEFM* / P07197* / neurofilament medium*ENSDARG0000004369739
nefma / neurofilament, medium polypeptide a / NEFM* / P07197* / neurofilament medium*ENSDARG0000002135139
vim / vimentin / P08670* / P20152*ENSDARG0000001000837
viml / vimentin like / VIM* / P08670* / vimentin*ENSDARG0000004450137
desmb / desmin b / DES* / desmin* / P17661* / P31001*ENSDARG0000000522136
prph / peripherin / P41219*ENSDARG0000002830634
gfap / glial fibrillary acidic protein / P03995* / P14136*ENSDARG0000002530134
desma / desmin a / DES* / desmin* / P17661* / P31001*ENSDARG0000005865634
si:dkey-33c12.3ENSDARG0000005788129
ngs / notochord granular surfaceENSDARG0000005432127
si:dkey-27m7.4ENSDARG0000000314626
zgc:172323ENSDARG0000005320125
zgc:136930ENSDARG0000005519221
lmna / lamin A / P02545* / P48678* / lamin A/C* / Prelamin-A/C Lamin-A/C*ENSDARG0000001341521
lmnb2 / lamin B2 / P21619* / Q03252*ENSDARG0000010162421
lmnb1 / lamin B1 / P14733* / P20700*ENSDARG0000004429921


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR002957  Keratin, type I
 IPR006821  Intermediate filament head, DNA-binding domain
 IPR018039  Intermediate filament protein, conserved site
 IPR027699  Vimentin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007399 nervous system development IEA
 cellular_componentGO:0005882 intermediate filament IEA
 cellular_componentGO:0005883 neurofilament IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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