ENSDARG00000005221


Danio rerio

Features
Gene ID: ENSDARG00000005221
  
Biological name :desmb
  
Synonyms : desmb / desmin b
  
Possible biological names infered from orthology : DES / desmin / P17661 / P31001
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 13871641
Gene end: 13891727
  
Corresponding Affymetrix probe sets: Dr.19602.1.S1_at (Zebrafish Array)   NM_001077452_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000065355
NCBI entrez gene - 768287     See in Manteia.
RefSeq - NM_001077452
RefSeq Peptide - NP_001070920
swissprot - F1QK59
ZFIN ID - ZDB-GENE-061027-102
Ensembl - ENSDARG00000005221
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DESENSGALG00000011306Gallus gallus
 DESENSG00000175084Homo sapiens
 DesENSMUSG00000026208Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
desma / desmin a / DES* / desmin* / P17661* / P31001*ENSDARG0000005865677
vim / vimentin / P08670* / P20152*ENSDARG0000001000854
viml / vimentin like / VIM* / P08670* / vimentin*ENSDARG0000004450154
gfap / glial fibrillary acidic protein / P03995* / P14136*ENSDARG0000002530150
prph / peripherin / P41219*ENSDARG0000002830649
inab / internexin neuronal intermediate filament protein, alpha b / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000005324843
inaa / internexin neuronal intermediate filament protein, alpha a / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000001186243
zgc:65851ENSDARG0000001228143
nefla / neurofilament, light polypeptide a / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000005756841
neflb / neurofilament, light polypeptide b / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000001242639
zgc:172323ENSDARG0000005320136
nefma / neurofilament, medium polypeptide a / NEFM* / P07197* / neurofilament medium*ENSDARG0000002135136
nefmb / neurofilament, medium polypeptide b / NEFM* / P07197* / neurofilament medium*ENSDARG0000004369736
ngs / notochord granular surfaceENSDARG0000005432136
si:dkey-33c12.3ENSDARG0000005788132
si:dkey-27m7.4ENSDARG0000000314631
lmnb1 / lamin B1 / P14733* / P20700*ENSDARG0000004429925
lmnb2 / lamin B2 / P21619* / Q03252*ENSDARG0000010162425
lmna / lamin A / P02545* / P48678* / lamin A/C* / Prelamin-A/C Lamin-A/C*ENSDARG0000001341525
zgc:136930ENSDARG0000005519223


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR006821  Intermediate filament head, DNA-binding domain
 IPR018039  Intermediate filament protein, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IGI
 biological_processGO:0007626 locomotory behavior IMP
 biological_processGO:0060538 skeletal muscle organ development IGI
 cellular_componentGO:0005882 intermediate filament IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism decreased mobility , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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