ENSDARG00000007751


Danio rerio

Features
Gene ID: ENSDARG00000007751
  
Biological name :lmnl3
  
Synonyms : lamin L3 / lmnl3
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 45845159
Gene end: 45860097
  
Corresponding Affymetrix probe sets: Dr.11524.1.S1_at (Zebrafish Array)   NM_152973_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000028051
Ensembl peptide - ENSDARP00000153566
NCBI entrez gene - 195817     See in Manteia.
RefSeq - XM_021469720
RefSeq - NM_152973
RefSeq Peptide - NP_694505
swissprot - Q6P0Z0
ZFIN ID - ZDB-GENE-020424-4
Ensembl - ENSDARG00000007751
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000006083Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lmna / lamin A / P02545* / P48678* / lamin A/C* / Prelamin-A/C Lamin-A/C*ENSDARG0000001341543
lmnb2 / lamin B2 / P21619* / Q03252*ENSDARG0000010162441
lmnb1 / lamin B1 / P14733* / P20700*ENSDARG0000004429940
desma / desmin a / DES* / desmin* / P17661* / P31001*ENSDARG0000005865620
desmb / desmin b / DES* / desmin* / P17661* / P31001*ENSDARG0000000522119
vim / vimentin / P08670* / P20152*ENSDARG0000001000818
gfap / glial fibrillary acidic protein / P03995* / P14136*ENSDARG0000002530118
nefmb / neurofilament, medium polypeptide b / NEFM* / P07197* / neurofilament medium*ENSDARG0000004369718
nefma / neurofilament, medium polypeptide a / NEFM* / P07197* / neurofilament medium*ENSDARG0000002135118
si:dkey-33c12.3ENSDARG0000005788117
inaa / internexin neuronal intermediate filament protein, alpha a / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000001186217
inab / internexin neuronal intermediate filament protein, alpha b / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000005324817
prph / peripherin / P41219*ENSDARG0000002830617
nefla / neurofilament, light polypeptide a / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000005756817
zgc:65851ENSDARG0000001228117
viml / vimentin like / VIM* / P08670* / vimentin*ENSDARG0000004450117
neflb / neurofilament, light polypeptide b / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000001242617
ngs / notochord granular surfaceENSDARG0000005432115
zgc:172323ENSDARG0000005320115
si:dkey-27m7.4ENSDARG0000000314615


Protein motifs (from Interpro)
Interpro ID Name
 IPR001322  Lamin tail domain
 IPR001664  Intermediate filament protein
 IPR018039  Intermediate filament protein, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005882 intermediate filament IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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