ENSDARG00000057881


Danio rerio

Features
Gene ID: ENSDARG00000057881
  
Biological name :si:dkey-33c12.3
  
Synonyms : si:dkey-33c12.3
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 9313777
Gene end: 9318891
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000118305
NCBI entrez gene - 335380     See in Manteia.
RefSeq - NM_001201557
RefSeq Peptide - NP_001188486
swissprot - B8A615
ZFIN ID - ZDB-GENE-030131-7320
Ensembl - ENSDARG00000057881
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nefla / neurofilament, light polypeptide a / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000005756844
inaa / internexin neuronal intermediate filament protein, alpha a / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000001186243
zgc:65851ENSDARG0000001228142
neflb / neurofilament, light polypeptide b / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000001242642
vim / vimentin / P08670* / P20152*ENSDARG0000001000841
viml / vimentin like / VIM* / P08670* / vimentin*ENSDARG0000004450141
inab / internexin neuronal intermediate filament protein, alpha b / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000005324841
desma / desmin a / DES* / desmin* / P17661* / P31001*ENSDARG0000005865640
gfap / glial fibrillary acidic protein / P03995* / P14136*ENSDARG0000002530139
desmb / desmin b / DES* / desmin* / P17661* / P31001*ENSDARG0000000522139
prph / peripherin / P41219*ENSDARG0000002830639
nefmb / neurofilament, medium polypeptide b / NEFM* / P07197* / neurofilament medium*ENSDARG0000004369737
nefma / neurofilament, medium polypeptide a / NEFM* / P07197* / neurofilament medium*ENSDARG0000002135137
si:dkey-27m7.4ENSDARG0000000314633
zgc:172323ENSDARG0000005320130
ngs / notochord granular surfaceENSDARG0000005432130
zgc:136930ENSDARG0000005519227
lmnb2 / lamin B2 / P21619* / Q03252*ENSDARG0000010162427
lmnb1 / lamin B1 / P14733* / P20700*ENSDARG0000004429926
lmnl3 / lamin L3ENSDARG0000000775125


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR018039  Intermediate filament protein, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005882 intermediate filament IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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