ENSDARG00000101624


Danio rerio

Features
Gene ID: ENSDARG00000101624
  
Biological name :lmnb2
  
Synonyms : lamin B2 / lmnb2
  
Possible biological names infered from orthology : P21619 / Q03252
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 3121086
Gene end: 3152357
  
Corresponding Affymetrix probe sets: Dr.5005.1.A1_at (Zebrafish Array)   Dr.5005.2.S1_at (Zebrafish Array)   Dr.8055.1.S1_at (Zebrafish Array)   NM_131002_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000139279
NCBI entrez gene - 30196     See in Manteia.
RefSeq - NM_131002
RefSeq Peptide - NP_571077
swissprot - B3DFN3
ZFIN ID - ZDB-GENE-990630-13
Ensembl - ENSDARG00000101624
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LMNB2ENSGALG00000000470Gallus gallus
 LMNB2ENSG00000176619Homo sapiens
 Lmnb2ENSMUSG00000062075Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lmnb1 / lamin B1 / P14733* / P20700*ENSDARG0000004429957
lmna / lamin A / P02545* / P48678* / lamin A/C* / Prelamin-A/C Lamin-A/C*ENSDARG0000001341556
lmnl3 / lamin L3ENSDARG0000000775141
nefmb / neurofilament, medium polypeptide b / NEFM* / P07197* / neurofilament medium*ENSDARG0000004369722
desma / desmin a / DES* / desmin* / P17661* / P31001*ENSDARG0000005865621
desmb / desmin b / DES* / desmin* / P17661* / P31001*ENSDARG0000000522120
zgc:65851ENSDARG0000001228120
gfap / glial fibrillary acidic protein / P03995* / P14136*ENSDARG0000002530120
viml / vimentin like / VIM* / P08670* / vimentin*ENSDARG0000004450120
neflb / neurofilament, light polypeptide b / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000001242620
prph / peripherin / P41219*ENSDARG0000002830620
inaa / internexin neuronal intermediate filament protein, alpha a / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000001186220
nefla / neurofilament, light polypeptide a / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000005756820
vim / vimentin / P08670* / P20152*ENSDARG0000001000820
nefma / neurofilament, medium polypeptide a / NEFM* / P07197* / neurofilament medium*ENSDARG0000002135119
inab / internexin neuronal intermediate filament protein, alpha b / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000005324818
ngs / notochord granular surfaceENSDARG0000005432118
si:dkey-33c12.3ENSDARG0000005788118
zgc:172323ENSDARG0000005320117
zgc:136930ENSDARG0000005519217


Protein motifs (from Interpro)
Interpro ID Name
 IPR001322  Lamin tail domain
 IPR001664  Intermediate filament protein
 IPR018039  Intermediate filament protein, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005635 nuclear envelope IDA
 cellular_componentGO:0005882 intermediate filament IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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