ENSDARG00000055192


Danio rerio

Features
Gene ID: ENSDARG00000055192
  
Biological name :zgc:136930
  
Synonyms : zgc:136930
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 32780138
Gene end: 32790887
  
Corresponding Affymetrix probe sets: Dr.24487.1.A1_at (Zebrafish Array)   NM_001039819_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000076687
NCBI entrez gene - 563946     See in Manteia.
RefSeq - NM_001039819
RefSeq Peptide - NP_001034908
swissprot - B0V1K4
ZFIN ID - ZDB-GENE-060312-16
Ensembl - ENSDARG00000055192
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gfap / glial fibrillary acidic protein / P03995* / P14136*ENSDARG0000002530125
desma / desmin a / DES* / desmin* / P17661* / P31001*ENSDARG0000005865625
zgc:65851ENSDARG0000001228125
viml / vimentin like / VIM* / P08670* / vimentin*ENSDARG0000004450125
vim / vimentin / P08670* / P20152*ENSDARG0000001000824
desmb / desmin b / DES* / desmin* / P17661* / P31001*ENSDARG0000000522123
inab / internexin neuronal intermediate filament protein, alpha b / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000005324823
inaa / internexin neuronal intermediate filament protein, alpha a / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000001186223
nefmb / neurofilament, medium polypeptide b / NEFM* / P07197* / neurofilament medium*ENSDARG0000004369722
nefla / neurofilament, light polypeptide a / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000005756822
si:dkey-33c12.3ENSDARG0000005788122
lmnb2 / lamin B2 / P21619* / Q03252*ENSDARG0000010162421
nefma / neurofilament, medium polypeptide a / NEFM* / P07197* / neurofilament medium*ENSDARG0000002135121
prph / peripherin / P41219*ENSDARG0000002830621
ngs / notochord granular surfaceENSDARG0000005432121
lmna / lamin A / P02545* / P48678* / lamin A/C* / Prelamin-A/C Lamin-A/C*ENSDARG0000001341521
neflb / neurofilament, light polypeptide b / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000001242621
si:dkey-27m7.4ENSDARG0000000314620
zgc:172323ENSDARG0000005320120
lmnb1 / lamin B1 / P14733* / P20700*ENSDARG0000004429919


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR018039  Intermediate filament protein, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005882 intermediate filament IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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