ENSDARG00000021351


Danio rerio

Features
Gene ID: ENSDARG00000021351
  
Biological name :nefma
  
Synonyms : nefma / neurofilament, medium polypeptide a
  
Possible biological names infered from orthology : NEFM / neurofilament medium / P07197
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 19013850
Gene end: 19018455
  
Corresponding Affymetrix probe sets: Dr.16132.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000074706
NCBI entrez gene - 553718     See in Manteia.
RefSeq - NM_001111214
RefSeq Peptide - NP_001104684
swissprot - F1QCR7
ZFIN ID - ZDB-GENE-050522-205
Ensembl - ENSDARG00000021351
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NEFMENSGALG00000000317Gallus gallus
 NEFMENSG00000104722Homo sapiens
 NefmENSMUSG00000022054Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nefmb / neurofilament, medium polypeptide b / NEFM* / P07197* / neurofilament medium*ENSDARG0000004369741
zgc:65851ENSDARG0000001228126
inaa / internexin neuronal intermediate filament protein, alpha a / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000001186226
inab / internexin neuronal intermediate filament protein, alpha b / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000005324825
nefla / neurofilament, light polypeptide a / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000005756823
neflb / neurofilament, light polypeptide b / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000001242623
vim / vimentin / P08670* / P20152*ENSDARG0000001000821
desmb / desmin b / DES* / desmin* / P17661* / P31001*ENSDARG0000000522120
gfap / glial fibrillary acidic protein / P03995* / P14136*ENSDARG0000002530120
viml / vimentin like / VIM* / P08670* / vimentin*ENSDARG0000004450120
desma / desmin a / DES* / desmin* / P17661* / P31001*ENSDARG0000005865620
prph / peripherin / P41219*ENSDARG0000002830619
si:dkey-27m7.4ENSDARG0000000314618
si:dkey-33c12.3ENSDARG0000005788117
zgc:172323ENSDARG0000005320116
ngs / notochord granular surfaceENSDARG0000005432116
lmna / lamin A / P02545* / P48678* / lamin A/C* / Prelamin-A/C Lamin-A/C*ENSDARG0000001341514
lmnb1 / lamin B1 / P14733* / P20700*ENSDARG0000004429914
lmnb2 / lamin B2 / P21619* / Q03252*ENSDARG0000010162413
zgc:136930ENSDARG0000005519212


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR002957  Keratin, type I
 IPR006821  Intermediate filament head, DNA-binding domain
 IPR011098  G5 domain
 IPR018039  Intermediate filament protein, conserved site
 IPR027697  Neurofilament medium polypeptide


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0061564 axon development IEA
 cellular_componentGO:0005882 intermediate filament IEA
 cellular_componentGO:0005883 neurofilament IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr