ENSDARG00000053201


Danio rerio

Features
Gene ID: ENSDARG00000053201
  
Biological name :zgc:172323
  
Synonyms : zgc:172323
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 32736588
Gene end: 32744258
  
Corresponding Affymetrix probe sets: Dr.18713.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000069676
Ensembl peptide - ENSDARP00000134256
NCBI entrez gene - 564165     See in Manteia.
RefSeq - NM_001114427
RefSeq Peptide - NP_001107899
swissprot - A9JRG7
swissprot - A0A0R4IIU9
ZFIN ID - ZDB-GENE-080204-113
Ensembl - ENSDARG00000053201
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ngs / notochord granular surfaceENSDARG0000005432138
desma / desmin a / DES* / desmin* / P17661* / P31001*ENSDARG0000005865620
desmb / desmin b / DES* / desmin* / P17661* / P31001*ENSDARG0000000522120
inab / internexin neuronal intermediate filament protein, alpha b / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000005324819
inaa / internexin neuronal intermediate filament protein, alpha a / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000001186218
nefla / neurofilament, light polypeptide a / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000005756818
viml / vimentin like / VIM* / P08670* / vimentin*ENSDARG0000004450118
vim / vimentin / P08670* / P20152*ENSDARG0000001000818
gfap / glial fibrillary acidic protein / P03995* / P14136*ENSDARG0000002530117
prph / peripherin / P41219*ENSDARG0000002830617
zgc:65851ENSDARG0000001228117
neflb / neurofilament, light polypeptide b / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000001242617
nefmb / neurofilament, medium polypeptide b / NEFM* / P07197* / neurofilament medium*ENSDARG0000004369716
nefma / neurofilament, medium polypeptide a / NEFM* / P07197* / neurofilament medium*ENSDARG0000002135116
si:dkey-33c12.3ENSDARG0000005788114
si:dkey-27m7.4ENSDARG0000000314613
lmnb2 / lamin B2 / P21619* / Q03252*ENSDARG0000010162412
lmna / lamin A / P02545* / P48678* / lamin A/C* / Prelamin-A/C Lamin-A/C*ENSDARG0000001341511
lmnb1 / lamin B1 / P14733* / P20700*ENSDARG0000004429911
zgc:136930ENSDARG0000005519211


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR006821  Intermediate filament head, DNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005882 intermediate filament ISS
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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