ENSDARG00000054321


Danio rerio

Features
Gene ID: ENSDARG00000054321
  
Biological name :ngs
  
Synonyms : ngs / notochord granular surface
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 5776347
Gene end: 5784895
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000070966
NCBI entrez gene - 572199     See in Manteia.
swissprot - B3DI58
ZFIN ID - ZDB-GENE-080722-29
Ensembl - ENSDARG00000054321
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:172323ENSDARG0000005320160
desma / desmin a / DES* / desmin* / P17661* / P31001*ENSDARG0000005865632
desmb / desmin b / DES* / desmin* / P17661* / P31001*ENSDARG0000000522131
viml / vimentin like / VIM* / P08670* / vimentin*ENSDARG0000004450130
inaa / internexin neuronal intermediate filament protein, alpha a / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000001186229
vim / vimentin / P08670* / P20152*ENSDARG0000001000829
nefla / neurofilament, light polypeptide a / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000005756828
zgc:65851ENSDARG0000001228128
neflb / neurofilament, light polypeptide b / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000001242628
inab / internexin neuronal intermediate filament protein, alpha b / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000005324828
prph / peripherin / P41219*ENSDARG0000002830628
gfap / glial fibrillary acidic protein / P03995* / P14136*ENSDARG0000002530128
nefma / neurofilament, medium polypeptide a / NEFM* / P07197* / neurofilament medium*ENSDARG0000002135125
nefmb / neurofilament, medium polypeptide b / NEFM* / P07197* / neurofilament medium*ENSDARG0000004369725
si:dkey-33c12.3ENSDARG0000005788122
lmnb1 / lamin B1 / P14733* / P20700*ENSDARG0000004429920
zgc:136930ENSDARG0000005519219
lmnb2 / lamin B2 / P21619* / Q03252*ENSDARG0000010162419
lmna / lamin A / P02545* / P48678* / lamin A/C* / Prelamin-A/C Lamin-A/C*ENSDARG0000001341519
si:dkey-27m7.4ENSDARG0000000314619


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR006821  Intermediate filament head, DNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0048570 notochord morphogenesis IMP
 biological_processGO:0060035 notochord cell development IMP
 cellular_componentGO:0005882 intermediate filament ISS
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000135 notochord notochord morphology , abnormal
notochord disorganized , abnormal
notochord granular , abnormal
notochord nucleus increased amount , abnormal
notochord cell decreased size , abnormal
notochord notochord inner cell separated from notochord inner cell , abnormal
notochord has extra parts of type anatomical space , abnormal
notochord nucleus spherical , abnormal
notochord nucleus decondensed , abnormal
notochord anatomical space mislocalised , abnormal
notochord cell proliferative , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
Show

 ZFA:0001189 vertebra vertebra immature , abnormal
vertebra fused with vertebra , abnormal
Show

 ZFA:0001559 vertebral column vertebral column bone development discontinuous , abnormal
vertebral column bone development disrupted , abnormal
Show

 ZFA:0005744 notochord outer sheath cell notochord outer sheath cell proliferative , abnormal
Show

 ZFA:0005746 notochord inner cell notochord inner cell vesicle decreased size , abnormal
notochord inner cell decreased size , abnormal
notochord inner cell cytoplasm increased volume , abnormal
notochord inner cell cytoplasm lacks parts or has fewer parts of type notochord inner cell intermediate filament, abnormal
notochord inner cell intermediate filament morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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