ENSDARG00000044299


Danio rerio

Features
Gene ID: ENSDARG00000044299
  
Biological name :lmnb1
  
Synonyms : lamin B1 / lmnb1
  
Possible biological names infered from orthology : P14733 / P20700
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 16036246
Gene end: 16056908
  
Corresponding Affymetrix probe sets: Dr.25051.1.S1_at (Zebrafish Array)   Dr.25051.1.S2_at (Zebrafish Array)   NM_152972_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000113714
Ensembl peptide - ENSDARP00000153143
Ensembl peptide - ENSDARP00000116004
Ensembl peptide - ENSDARP00000065036
Ensembl peptide - ENSDARP00000105955
NCBI entrez gene - 195816     See in Manteia.
RefSeq - NM_152972
RefSeq - XM_005155556
RefSeq Peptide - NP_694504
swissprot - F1QHC4
swissprot - E9QIC9
swissprot - E9QCX6
swissprot - F1Q5F3
ZFIN ID - ZDB-GENE-020424-2
Ensembl - ENSDARG00000044299
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LMNB1ENSGALG00000014692Gallus gallus
 LMNB1ENSG00000113368Homo sapiens
 Lmnb1ENSMUSG00000024590Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lmnb2 / lamin B2 / P21619* / Q03252*ENSDARG0000010162455
lmna / lamin A / P02545* / P48678* / lamin A/C* / Prelamin-A/C Lamin-A/C*ENSDARG0000001341551
lmnl3 / lamin L3ENSDARG0000000775139
desmb / desmin b / DES* / desmin* / P17661* / P31001*ENSDARG0000000522120
nefmb / neurofilament, medium polypeptide b / NEFM* / P07197* / neurofilament medium*ENSDARG0000004369720
desma / desmin a / DES* / desmin* / P17661* / P31001*ENSDARG0000005865620
viml / vimentin like / VIM* / P08670* / vimentin*ENSDARG0000004450120
nefma / neurofilament, medium polypeptide a / NEFM* / P07197* / neurofilament medium*ENSDARG0000002135120
neflb / neurofilament, light polypeptide b / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000001242620
zgc:65851ENSDARG0000001228120
nefla / neurofilament, light polypeptide a / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000005756820
inaa / internexin neuronal intermediate filament protein, alpha a / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000001186220
gfap / glial fibrillary acidic protein / P03995* / P14136*ENSDARG0000002530119
inab / internexin neuronal intermediate filament protein, alpha b / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000005324819
prph / peripherin / P41219*ENSDARG0000002830619
vim / vimentin / P08670* / P20152*ENSDARG0000001000819
ngs / notochord granular surfaceENSDARG0000005432118
si:dkey-33c12.3ENSDARG0000005788117
zgc:172323ENSDARG0000005320115
zgc:136930ENSDARG0000005519215


Protein motifs (from Interpro)
Interpro ID Name
 IPR001322  Lamin tail domain
 IPR001664  Intermediate filament protein
 IPR018039  Intermediate filament protein, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005882 intermediate filament IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
Formation of Senescence-Associated Heterochromatin Foci (SAHF)
Breakdown of the nuclear lamina
Depolymerisation of the Nuclear Lamina


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000044299 lmnb1 / lamin B1 / P14733* / P20700*  / complex






 

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