ENSGALG00000014692


Gallus gallus

Features
Gene ID: ENSGALG00000014692
  
Biological name :LMNB1
  
Synonyms : lamin-B1 / LMNB1
  
Possible biological names infered from orthology : P14733 / P20700
  
Species: Gallus gallus
  
Chr. number: Z
Strand: 1
Band:
Gene start: 56212816
Gene end: 56235773
  
Corresponding Affymetrix probe sets: Gga.1368.1.S1_at (Chicken Array)   Gga.1368.1.S2_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000023635
NCBI entrez gene - 396223     See in Manteia.
RefSeq - NM_205286
RefSeq Peptide - NP_990617
swissprot - F1NAM2
Ensembl - ENSGALG00000014692
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lmnb1ENSDARG00000044299Danio rerio
 LMNB1ENSG00000113368Homo sapiens
 Lmnb1ENSMUSG00000024590Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LMNB2 / lamin-B2 / P21619* / Q03252*ENSGALG0000000047058
LMNA* / P02545* / P48678* / lamin A/C* / Prelamin-A/C Lamin-A/C*ENSGALG0000000608346
NEFL / neurofilament light / P07196* / P08551* / Neurofilament light polypeptide *ENSGALG0000000031422
DES / desmin / P17661* / P31001*ENSGALG0000001130621
NEFM / neurofilament medium polypeptide / P07197* / neurofilament medium*ENSGALG0000000031720
GFAP / glial fibrillary acidic protein / P03995* / P14136*ENSGALG0000000090919
VIM / vimentin / P08670* / P20152*ENSGALG0000000867719
NEFH / neurofilament heavy / P12036* / P19246* / Neurofilament heavy polypeptide *ENSGALG0000000808518


Protein motifs (from Interpro)
Interpro ID Name
 IPR001322  Lamin tail domain
 IPR001664  Intermediate filament protein
 IPR018039  Intermediate filament protein, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005637 nuclear inner membrane IEA
 cellular_componentGO:0005638 lamin filament IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005882 intermediate filament IEA
 cellular_componentGO:0016363 nuclear matrix IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0043274 phospholipase binding IEA


Pathways (from Reactome)
Pathway description
Formation of Senescence-Associated Heterochromatin Foci (SAHF)
Breakdown of the nuclear lamina


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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