ENSGALG00000008677


Gallus gallus

Features
Gene ID: ENSGALG00000008677
  
Biological name :VIM
  
Synonyms : VIM / vimentin
  
Possible biological names infered from orthology : P08670 / P20152
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 19823100
Gene end: 19830837
  
Corresponding Affymetrix probe sets: Gga.9346.3.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000061498
Ensembl peptide - ENSGALP00000063576
Ensembl peptide - ENSGALP00000063392
Ensembl peptide - ENSGALP00000063024
Ensembl peptide - ENSGALP00000062748
Ensembl peptide - ENSGALP00000062384
Ensembl peptide - ENSGALP00000062220
Ensembl peptide - ENSGALP00000014107
Ensembl peptide - ENSGALP00000043515
Ensembl peptide - ENSGALP00000058980
NCBI entrez gene - 420519     See in Manteia.
RefSeq - NM_001048076
RefSeq Peptide - NP_001041541
swissprot - A0A1L1RW09
swissprot - A0A1L1RV87
swissprot - A0A1L1RXL9
swissprot - A0A1D5NT62
swissprot - F1NJ08
swissprot - A0A1L1RRR9
swissprot - A0A1L1RX27
Ensembl - ENSGALG00000008677
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vimENSDARG00000010008Danio rerio
 vimlENSDARG00000044501Danio rerio
 VIMENSG00000026025Homo sapiens
 VimENSMUSG00000026728Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DES / desmin / P17661* / P31001*ENSGALG0000001130662
GFAP / glial fibrillary acidic protein / P03995* / P14136*ENSGALG0000000090952
NEFL / neurofilament light / P07196* / P08551* / Neurofilament light polypeptide *ENSGALG0000000031443
NEFM / neurofilament medium polypeptide / P07197* / neurofilament medium*ENSGALG0000000031741
NEFH / neurofilament heavy / P12036* / P19246* / Neurofilament heavy polypeptide *ENSGALG0000000808535
LMNB2 / lamin-B2 / P21619* / Q03252*ENSGALG0000000047027
LMNB1 / lamin-B1 / P14733* / P20700*ENSGALG0000001469224
LMNA* / P02545* / P48678* / lamin A/C* / Prelamin-A/C Lamin-A/C*ENSGALG0000000608323


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR002957  Keratin, type I
 IPR006821  Intermediate filament head, DNA-binding domain
 IPR018039  Intermediate filament protein, conserved site
 IPR027699  Vimentin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0010977 negative regulation of neuron projection development IEA
 biological_processGO:0014002 astrocyte development IEA
 biological_processGO:0032967 positive regulation of collagen biosynthetic process IEA
 biological_processGO:0043488 regulation of mRNA stability IEA
 biological_processGO:0045103 intermediate filament-based process IEA
 biological_processGO:0045109 intermediate filament organization IEA
 biological_processGO:0045727 positive regulation of translation IEA
 biological_processGO:0060020 Bergmann glial cell differentiation IEA
 biological_processGO:0060395 SMAD protein signal transduction IEA
 biological_processGO:0070307 lens fiber cell development IEA
 biological_processGO:0071346 cellular response to interferon-gamma IEA
 cellular_componentGO:0005623 cell IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005777 peroxisome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005844 polysome IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005882 intermediate filament IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0031252 cell leading edge IEA
 cellular_componentGO:0042995 cell projection IDA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0045335 phagocytic vesicle IEA
 molecular_functionGO:0003725 double-stranded RNA binding IEA
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005212 structural constituent of eye lens IEA
 molecular_functionGO:0008022 protein C-terminus binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0097110 scaffold protein binding IEA
 molecular_functionGO:1990254 keratin filament binding IEA


Pathways (from Reactome)
Pathway description
Caspase-mediated cleavage of cytoskeletal proteins
Striated Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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