ENSDARG00000010008


Danio rerio

Features
Gene ID: ENSDARG00000010008
  
Biological name :vim
  
Synonyms : vim / vimentin
  
Possible biological names infered from orthology : P08670 / P20152
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 32176155
Gene end: 32192681
  
Corresponding Affymetrix probe sets: Dr.8242.1.A1_at (Zebrafish Array)   NM_131872_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000016261
NCBI entrez gene - 140599     See in Manteia.
RefSeq - NM_131872
RefSeq Peptide - NP_571947
swissprot - F1QAM8
ZFIN ID - ZDB-GENE-011212-3
Ensembl - ENSDARG00000010008
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VIMENSGALG00000008677Gallus gallus
 VIMENSG00000026025Homo sapiens
 VimENSMUSG00000026728Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
viml / vimentin like / VIM* / P08670* / vimentin*ENSDARG0000004450171
desma / desmin a / DES* / desmin* / P17661* / P31001*ENSDARG0000005865656
desmb / desmin b / DES* / desmin* / P17661* / P31001*ENSDARG0000000522156
gfap / glial fibrillary acidic protein / P03995* / P14136*ENSDARG0000002530154
prph / peripherin / P41219*ENSDARG0000002830653
inab / internexin neuronal intermediate filament protein, alpha b / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000005324847
inaa / internexin neuronal intermediate filament protein, alpha a / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000001186247
zgc:65851ENSDARG0000001228146
nefla / neurofilament, light polypeptide a / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000005756842
neflb / neurofilament, light polypeptide b / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000001242640
nefmb / neurofilament, medium polypeptide b / NEFM* / P07197* / neurofilament medium*ENSDARG0000004369739
nefma / neurofilament, medium polypeptide a / NEFM* / P07197* / neurofilament medium*ENSDARG0000002135138
si:dkey-33c12.3ENSDARG0000005788135
ngs / notochord granular surfaceENSDARG0000005432134
zgc:172323ENSDARG0000005320134
si:dkey-27m7.4ENSDARG0000000314631
lmnb1 / lamin B1 / P14733* / P20700*ENSDARG0000004429925
zgc:136930ENSDARG0000005519225
lmna / lamin A / P02545* / P48678* / lamin A/C* / Prelamin-A/C Lamin-A/C*ENSDARG0000001341525
lmnb2 / lamin B2 / P21619* / Q03252*ENSDARG0000010162425


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR006821  Intermediate filament head, DNA-binding domain
 IPR018039  Intermediate filament protein, conserved site
 IPR027699  Vimentin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005882 intermediate filament IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
Caspase-mediated cleavage of cytoskeletal proteins
Striated Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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