ENSDARG00000025301


Danio rerio

Features
Gene ID: ENSDARG00000025301
  
Biological name :gfap
  
Synonyms : gfap / glial fibrillary acidic protein
  
Possible biological names infered from orthology : P03995 / P14136
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 31792441
Gene end: 31804481
  
Corresponding Affymetrix probe sets: Dr.14127.1.S1_at (Zebrafish Array)   NM_131373_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000029607
NCBI entrez gene - 30646     See in Manteia.
RefSeq - NM_131373
RefSeq - XM_005163983
RefSeq Peptide - NP_571448
swissprot - F1RAE8
ZFIN ID - ZDB-GENE-990914-3
Ensembl - ENSDARG00000025301
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GFAPENSGALG00000000909Gallus gallus
 GFAPENSG00000131095Homo sapiens
 GfapENSMUSG00000020932Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
viml / vimentin like / VIM* / P08670* / vimentin*ENSDARG0000004450155
vim / vimentin / P08670* / P20152*ENSDARG0000001000855
desma / desmin a / DES* / desmin* / P17661* / P31001*ENSDARG0000005865653
desmb / desmin b / DES* / desmin* / P17661* / P31001*ENSDARG0000000522153
prph / peripherin / P41219*ENSDARG0000002830650
inab / internexin neuronal intermediate filament protein, alpha b / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000005324846
inaa / internexin neuronal intermediate filament protein, alpha a / INA* / Q16352* / P46660* / internexin neuronal intermediate filament protein alpha*ENSDARG0000001186246
zgc:65851ENSDARG0000001228143
nefla / neurofilament, light polypeptide a / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000005756840
nefma / neurofilament, medium polypeptide a / NEFM* / P07197* / neurofilament medium*ENSDARG0000002135139
nefmb / neurofilament, medium polypeptide b / NEFM* / P07197* / neurofilament medium*ENSDARG0000004369739
neflb / neurofilament, light polypeptide b / NEFL* / P08551* / P07196* / neurofilament light* / Neurofilament light polypeptide *ENSDARG0000001242638
si:dkey-33c12.3ENSDARG0000005788134
ngs / notochord granular surfaceENSDARG0000005432134
zgc:172323ENSDARG0000005320133
si:dkey-27m7.4ENSDARG0000000314632
lmna / lamin A / P02545* / P48678* / lamin A/C* / Prelamin-A/C Lamin-A/C*ENSDARG0000001341527
zgc:136930ENSDARG0000005519227
lmnb2 / lamin B2 / P21619* / Q03252*ENSDARG0000010162426
lmnb1 / lamin B1 / P14733* / P20700*ENSDARG0000004429926


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR002957  Keratin, type I
 IPR006821  Intermediate filament head, DNA-binding domain
 IPR018039  Intermediate filament protein, conserved site
 IPR027701  Glial fibrillary acidic protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005882 intermediate filament IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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