ENSG00000113368


Homo sapiens

Features
Gene ID: ENSG00000113368
  
Biological name :LMNB1
  
Synonyms : lamin B1 / LMNB1 / P20700
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q23.2
Gene start: 126776623
Gene end: 126837020
  
Corresponding Affymetrix probe sets: 203276_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000261366
Ensembl peptide - ENSP00000486992
Ensembl peptide - ENSP00000486528
Ensembl peptide - ENSP00000378761
NCBI entrez gene - 4001     See in Manteia.
OMIM - 150340
RefSeq - NM_005573
RefSeq - NM_001198557
RefSeq Peptide - NP_001185486
RefSeq Peptide - NP_005564
swissprot - P20700
swissprot - A0A0D9SFY5
swissprot - A0A0D9SFE5
swissprot - E9PBF6
Ensembl - ENSG00000113368
  
Related genetic diseases (OMIM): 169500 - Leukodystrophy, adult-onset, autosomal dominant, 169500
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lmnb1ENSDARG00000044299Danio rerio
 LMNB1ENSGALG00000014692Gallus gallus
 Lmnb1ENSMUSG00000024590Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LMNB2 / Q03252 / lamin B2ENSG0000017661959
LMNA / P02545 / lamin A/CENSG0000016078955
NEFM / P07197 / neurofilament mediumENSG0000010472222
PRPH / P41219 / peripherinENSG0000013540622
DES / desmin / P17661ENSG0000017508422
NEFL / P07196 / neurofilament lightENSG0000027758621
NEFH / P12036 / neurofilament heavyENSG0000010028521
VIM / P08670 / vimentinENSG0000002602520
INA / Q16352 / internexin neuronal intermediate filament protein alphaENSG0000014879820
GFAP / P14136 / glial fibrillary acidic proteinENSG0000013109519


Protein motifs (from Interpro)
Interpro ID Name
 IPR001322  Lamin tail domain
 IPR001664  Intermediate filament protein
 IPR018039  Intermediate filament protein, conserved site
 IPR036415  Lamin tail domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035722 interleukin-12-mediated signaling pathway TAS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005637 nuclear inner membrane IEA
 cellular_componentGO:0005638 lamin filament TAS
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005882 intermediate filament IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016363 nuclear matrix IEA
 cellular_componentGO:0031965 nuclear membrane HDA
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043274 phospholipase binding IEA


Pathways (from Reactome)
Pathway description
Meiotic synapsis
Formation of Senescence-Associated Heterochromatin Foci (SAHF)
Clearance of Nuclear Envelope Membranes from Chromatin
Initiation of Nuclear Envelope Reformation
Breakdown of the nuclear lamina
Depolymerisation of the Nuclear Lamina
Deregulated CDK5 triggers multiple neurodegenerative pathways in Alzheimers disease models
Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000012 Urinary urgency 
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 HP:0000079 Abnormality of the urinary tract 
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 HP:0000365 Hearing loss 
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 HP:0000572 Visual loss 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000751 Personality changes 
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 HP:0000802 Impotence 
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 HP:0000966 Hypohidrosis "Abnormally diminished capacity to sweat." [HPO:curators]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002019 Constipation 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002171 Gliosis 
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 HP:0002273 Tetraparesis 
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 HP:0002344 Progressive neurologic deterioration 
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 HP:0002415 Leukodystrophy 
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 HP:0002615 Hypotension 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003581 Onset in adulthood 
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 HP:0003676 Progressive disorder 
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 HP:0004926 Orthostatic hypotension due to autonomic dysfunction 
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 HP:0005341 Abnormal bladder regulation due to autonomic dysfunction 
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 HP:0006827 MRI shows atrophy of the spinal cord 
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 HP:0006994 Leukoencephalopathy, diffuse 
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 HP:0007024 Pseudobulbar paralysis "Bilateral impairment of the function of the cranial nerves 9-12, which control musculature involved in eating, swallowing, and speech. Pseudobulbar paralysis is characterized clinically by dysarthria, dysphonia, and dysphagia with bifacial paralysis, and may be accompanied by `Pseudobulbar behavioral symptoms` (HP:0002193) such as enforced crying and laughing." [HPO:sdoelken]
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 HP:0007256 Mild pyramidal signs 
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 HP:0007262 Demyelination, symmetric 
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 HP:0007371 Atrophy/Degeneration of the corpus callosum "The presence of atrophy (wasting) of the corpus callosum." [HPO:sdoelken]
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 HP:0007480 Decreased sweating due to autonomic dysfunction 
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 HP:0008652 Impotence due to autonomic dysfunction 
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 HP:0010955 Dilatation of the bladder "The presence of a `dilated` (PATO:0001571) `urinary bladder` (FMA:15900)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000113368 LMNB1 / P20700 / lamin B1  / complex
 ENSG00000138794 CASP6 / P55212 / caspase 6  / reaction
 ENSG00000164885 CDK5 / Q00535 / cyclin dependent kinase 5  / reaction






 

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