ENSG00000277586


Homo sapiens

Features
Gene ID: ENSG00000277586
  
Biological name :NEFL
  
Synonyms : NEFL / neurofilament light / P07196
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: p21.2
Gene start: 24950955
Gene end: 24957110
  
Corresponding Affymetrix probe sets: 221801_x_at (Human Genome U133 Plus 2.0 Array)   221805_at (Human Genome U133 Plus 2.0 Array)   221916_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000482169
Ensembl peptide - ENSP00000491612
Ensembl peptide - ENSP00000483690
NCBI entrez gene - 4747     See in Manteia.
OMIM - 162280
RefSeq - NM_006158
RefSeq Peptide - NP_006149
swissprot - A0A0S2Z436
swissprot - A0A087X0W2
swissprot - P07196
Ensembl - ENSG00000277586
  
Related genetic diseases (OMIM): 607684 - Charcot-Marie-Tooth disease, type 2E, 607684
  607734 - Charcot-Marie-Tooth disease, type 1F, 607734
  617882 - Charcot-Marie-Tooth disease, dominant intermediate G, 617882
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 neflaENSDARG00000057568Danio rerio
 neflbENSDARG00000012426Danio rerio
 NEFLENSGALG00000000314Gallus gallus
 NeflENSMUSG00000022055Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NEFM / P07197 / neurofilament mediumENSG0000010472243
INA / Q16352 / internexin neuronal intermediate filament protein alphaENSG0000014879843
DES / desmin / P17661ENSG0000017508438
VIM / P08670 / vimentinENSG0000002602537
PRPH / P41219 / peripherinENSG0000013540636
NEFH / P12036 / neurofilament heavyENSG0000010028535
GFAP / P14136 / glial fibrillary acidic proteinENSG0000013109532
LMNA / P02545 / lamin A/CENSG0000016078923
LMNB1 / P20700 / lamin B1ENSG0000011336823
LMNB2 / Q03252 / lamin B2ENSG0000017661923


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR006821  Intermediate filament head, DNA-binding domain
 IPR018039  Intermediate filament protein, conserved site
 IPR027692  Neurofilament light polypeptide


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000165 MAPK cascade TAS
 biological_processGO:0000226 microtubule cytoskeleton organization IEA
 biological_processGO:0008089 anterograde axonal transport IMP
 biological_processGO:0008090 retrograde axonal transport IMP
 biological_processGO:0009636 response to toxic substance IEA
 biological_processGO:0010033 response to organic substance IEA
 biological_processGO:0014012 peripheral nervous system axon regeneration IEA
 biological_processGO:0019896 axonal transport of mitochondrion IMP
 biological_processGO:0021510 spinal cord development IEA
 biological_processGO:0021766 hippocampus development IEA
 biological_processGO:0021987 cerebral cortex development IEA
 biological_processGO:0031133 regulation of axon diameter IEA
 biological_processGO:0033693 neurofilament bundle assembly IMP
 biological_processGO:0040011 locomotion IEA
 biological_processGO:0043434 response to peptide hormone IEA
 biological_processGO:0043524 negative regulation of neuron apoptotic process IEA
 biological_processGO:0045105 intermediate filament polymerization or depolymerization IEA
 biological_processGO:0045109 intermediate filament organization IEA
 biological_processGO:0045110 intermediate filament bundle assembly IEA
 biological_processGO:0048812 neuron projection morphogenesis IEA
 biological_processGO:0050772 positive regulation of axonogenesis IEA
 biological_processGO:0050885 neuromuscular process controlling balance IEA
 biological_processGO:0051258 protein polymerization IEA
 biological_processGO:0051412 response to corticosterone IEA
 biological_processGO:0060052 neurofilament cytoskeleton organization IEA
 biological_processGO:0061564 axon development IEA
 biological_processGO:0065009 regulation of molecular function IEA
 biological_processGO:1903935 response to sodium arsenite IEA
 biological_processGO:1903937 response to acrylamide IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005882 intermediate filament IEA
 cellular_componentGO:0005883 neurofilament IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030426 growth cone IEA
 cellular_componentGO:0033596 TSC1-TSC2 complex IDA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043209 myelin sheath IEA
 cellular_componentGO:1904115 axon cytoplasm IEA
 molecular_functionGO:0005088 Ras guanyl-nucleotide exchange factor activity TAS
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IPI
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0030674 protein binding, bridging IEA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0043274 phospholipase binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
Unblocking of NMDA receptor, glutamate binding and activation
CREB phosphorylation through the activation of CaMKII
Ras activation upon Ca2+ influx through NMDA receptor
RAF/MAP kinase cascade


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0001171 Ectrodactyly (hands) 
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 HP:0001178 Claw hand deformities (in severe cases) 
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 HP:0001265 Hyporeflexia 
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 HP:0001270 Motor retardation 
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 HP:0001284 Areflexia 
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 HP:0001371 Contractures 
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 HP:0001425 Heterogeneous 
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 HP:0001761 Pes cavus 
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 HP:0001765 Hammer toes 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002936 Distal sensory impairment 
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 HP:0003376 Steppage gait "An abnormal gait pattern that arises from weakness of the pretibial and peroneal muscles due to a lower motor neuron lesion. Affected patients have footdrop and are unable to dorsiflex and evert the foot. The leg is lifted high on walking so that the toes clear the ground, and there may be a slapping noise when the foot strikes the ground again." [HPO:curators]
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 HP:0003380 Decreased number of myelinated fibers "A loss of myelinated nerve fibers (in general, this finding can be observed on nerve biopsy)." [HPO:curators]
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 HP:0003383 Onion bulb formations on nerve biopsy 
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 HP:0003431 Decreased motor nerve conduction velocity (NCV) 
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 HP:0003481 Segmental demyelination/remyelination 
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 HP:0003621 Juvenile onset 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0003798 Nemaline bodies "Nemaline rods are abnormal bodies are abnormal that can occur in skeletal muscle fibers. THe rods can be observed on histological analysis of muscle biopsy tissue or upon electron microscopy, where they appear either as extensions of sarcomeric Z-lines, in random array without obvious attachment to Z-lines (often in areas devoid of sarcomeres) or in large clusters localized at the sarcolemma or intermyofibrillar spaces." [HPO:curators, pmid:11333380]
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 HP:0003828 Variable expressivity 
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 HP:0004336 Myelin outfoldings 
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 HP:0006006 Hypotrophy of the small hand muscles 
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 HP:0007233 Clusters of axonal regeneration 
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 HP:0009025 Increased connective tissue "The presence of an abnormally increased amount of connective tissue." [HPO:curators]
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 HP:0009027 Foot dorsiflexor weakness 
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000033122 LRRC7 / Q96NW7 / leucine rich repeat containing 7  / complex
 ENSG00000082458 DLG3 / Q92796 / discs large MAGUK scaffold protein 3  / complex
 ENSG00000113319 O14827 / RASGRF2 / Ras protein specific guanine nucleotide releasing factor 2  / reaction / complex
 ENSG00000120251 GRIA2 / P42262 / glutamate ionotropic receptor AMPA type subunit 2  / reaction
 ENSG00000058404 CAMK2B / Q13554 / calcium/calmodulin dependent protein kinase II beta  / complex / reaction
 ENSG00000155511 GRIA1 / P42261 / glutamate ionotropic receptor AMPA type subunit 1  / reaction
 ENSG00000152578 GRIA4 / P48058 / glutamate ionotropic receptor AMPA type subunit 4  / reaction
 ENSG00000150672 DLG2 / Q15700 / discs large MAGUK scaffold protein 2  / complex
 ENSG00000132535 DLG4 / P78352 / discs large MAGUK scaffold protein 4  / complex
 ENSG00000148660 CAMK2G / Q13555 / calcium/calmodulin dependent protein kinase II gamma  / complex / reaction
 ENSG00000145349 CAMK2D / Q13557 / calcium/calmodulin dependent protein kinase II delta  / complex / reaction
 ENSG00000183454 GRIN2A / Q12879 / glutamate ionotropic receptor NMDA type subunit 2A  / complex
 ENSG00000127914 AKAP9 / Q99996 / A-kinase anchoring protein 9  / complex
 ENSG00000070808 CAMK2A / Q9UQM7 / calcium/calmodulin dependent protein kinase II alpha  / complex / reaction
 ENSG00000176884 GRIN1 / Q05586 / glutamate ionotropic receptor NMDA type subunit 1  / complex
 ENSG00000198668 CALM1 / P0DP23 / calmodulin 1  / reaction / complex
 ENSG00000075711 DLG1 / Q12959 / discs large MAGUK scaffold protein 1  / complex
 ENSG00000077522 ACTN2 / P35609 / actinin alpha 2  / complex
 ENSG00000058335 Q13972 / RASGRF1 / Ras protein specific guanine nucleotide releasing factor 1  / complex / reaction
 ENSG00000125675 GRIA3 / P42263 / glutamate ionotropic receptor AMPA type subunit 3  / reaction
 ENSG00000161509 GRIN2C / Q14957 / glutamate ionotropic receptor NMDA type subunit 2C  / complex
 ENSG00000105464 GRIN2D / O15399 / glutamate ionotropic receptor NMDA type subunit 2D  / complex
 ENSG00000273079 GRIN2B / Q13224 / glutamate ionotropic receptor NMDA type subunit 2B  / complex
 ENSG00000174775 HRAS / P01112 / HRas proto-oncogene, GTPase  / reaction






 

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