ENSG00000175084


Homo sapiens

Features
Gene ID: ENSG00000175084
  
Biological name :DES
  
Synonyms : DES / desmin / P17661
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q35
Gene start: 219418377
Gene end: 219426739
  
Corresponding Affymetrix probe sets: 202222_s_at (Human Genome U133 Plus 2.0 Array)   214027_x_at (Human Genome U133 Plus 2.0 Array)   216947_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000363071
NCBI entrez gene - 1674     See in Manteia.
OMIM - 125660
RefSeq - NM_001927
RefSeq Peptide - NP_001918
swissprot - P17661
swissprot - Q53SB5
Ensembl - ENSG00000175084
  
Related genetic diseases (OMIM): 181400 - Scapuloperoneal syndrome, neurogenic, Kaeser type, 181400
  601419 - Myopathy, myofibrillar, 1, 601419
  604765 - Cardiomyopathy, dilated, 1I, 604765
  615325 - ?Muscular dystrophy, limb-girdle, type 2R, 615325
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 desmaENSDARG00000058656Danio rerio
 desmbENSDARG00000005221Danio rerio
 DESENSGALG00000011306Gallus gallus
 DesENSMUSG00000026208Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VIM / P08670 / vimentinENSG0000002602562
PRPH / P41219 / peripherinENSG0000013540658
GFAP / P14136 / glial fibrillary acidic proteinENSG0000013109549
INA / Q16352 / internexin neuronal intermediate filament protein alphaENSG0000014879844
NEFL / P07196 / neurofilament lightENSG0000027758644
NEFM / P07197 / neurofilament mediumENSG0000010472239
NEFH / P12036 / neurofilament heavyENSG0000010028537
LMNB1 / P20700 / lamin B1ENSG0000011336828
LMNB2 / Q03252 / lamin B2ENSG0000017661928
LMNA / P02545 / lamin A/CENSG0000016078927


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR006821  Intermediate filament head, DNA-binding domain
 IPR018039  Intermediate filament protein, conserved site
 IPR027698  Desmin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction TAS
 biological_processGO:0007010 cytoskeleton organization TAS
 biological_processGO:0008016 regulation of heart contraction TAS
 biological_processGO:0030049 muscle filament sliding TAS
 biological_processGO:0045109 intermediate filament organization IMP
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005882 intermediate filament TAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0005916 fascia adherens IEA
 cellular_componentGO:0014704 intercalated disc IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030018 Z disc IEA
 cellular_componentGO:0031594 neuromuscular junction IEA
 cellular_componentGO:0042383 sarcolemma IEA
 cellular_componentGO:0043292 contractile fiber IEA
 cellular_componentGO:0045111 intermediate filament cytoskeleton IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0097512 cardiac myofibril IDA
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008092 cytoskeletal protein binding IPI
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000467 Neck muscle weakness 
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0001283 Bulbar palsy "Bulbar weakness (or bulbar palsy) refers to bilateral impairment of function of the lower cranial nerves IX, X, XI and XII, which occurs due to lower motor neuron lesion either at nuclear or fascicular level in the medulla or from bilateral lesions of the lower cranial nerves outside the brain-stem. Bulbar weakness is often associated with difficulty in chewing, weakness of the facial muscles, dysarthria, palatal weakness and regurgitation of fluids, dysphagia, and dysphonia." [HPO:curators]
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 HP:0001639 Hypertrophic cardiomyopathy 
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001874 Abnormality of neutrophil 
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 HP:0002014 Diarrhea 
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 HP:0002019 Constipation 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002600 Hyporeflexia of lower limbs 
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 HP:0002747 Respiratory insufficiency due to muscle weakness 
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 HP:0002987 Elbow contractures 
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 HP:0003198 Myopathy 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003458 EMG myopathic abnormalities "The presence of abnormal electromyographic patterns indicative of myopathy, such as small-short polyphasic motor unit potentials." [HPO:curators]
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 HP:0003560 Muscular dystrophy "The term dystrophy means abnormal growth. However, muscular dystrophy is used to describe primary myopathies with a genetic basis and a progressive course characterized by progressive skeletal muscle weakness, defects in muscle proteins, and the apoptosis of muscle cells." [HPO:curators]
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 HP:0003676 Progressive disorder 
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 HP:0003691 Scapular winging 
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 HP:0003694 Proximal muscle weakness occurs later "Lack of strength of the proximal musculature occuring late in the clinical course." [HPO:curators]
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 HP:0003704 Scapuloperoneal weakness 
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 HP:0003724 Shoulder girdle muscle atrophy "Amyotrophy affecting the muscles of the shoulder girdle." [HPO:curators]
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 HP:0003812 Phenotypic variability 
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 HP:0005130 Restrictive heart failure 
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 HP:0006673 Reduced systolic function 
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 HP:0009027 Foot dorsiflexor weakness 
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 HP:0009049 Peroneal muscle atrophy "Atrophy of the peroneous muscles, `peroneus longus (also known as Fibularis longus) (FMA:22539), `Peroneus brevis (also known as fibularis brevis` (FMA:22540), and `Peroneus tertius (also known as fibularis tertius` (FMA:22538)." [HPO:probinson]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0011663 Arrhythmogenic right ventricular cardiomyopathy "Arrhythmogenic right ventricular cardiomyopathy (ARVC) is defined histologically by the presence of progressive replacement of right ventricular myocardium with adipose and fibrous tissue often confined to a triangle of dysplasia comprising the right ventricular inflow, outflow, and apex. While these pathologic abnormalities can result in functional and morphological right ventricular abnormalities, they also occur in the left ventricle, producing a DCM phenotype, or can be present in the absence of clinically detectable structural changes in either ventricle. For the purposes of this classification, ARVC is defined by the presence of right ventricular dysfunction (global or regional), with or without left ventricular disease, in the presence of histological evidence for the disease and/or electrocardiographic abnormalities in accordance with published criteria." [pmid:17916581]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0100578 Lipoatrophy "Localized loss of fat tissue." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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