ENSDARG00000004861


Danio rerio

Features
Gene ID: ENSDARG00000004861
  
Biological name :esrrb
  
Synonyms : esrrb / esrrga / estrogen-related receptor beta
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 29797876
Gene end: 29902187
  
Corresponding Affymetrix probe sets: DrAffx.2.22.S1_at (Zebrafish Array)   NM_212954_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000136509
Ensembl peptide - ENSDARP00000005364
NCBI entrez gene - 405890     See in Manteia.
RefSeq - NM_212954
RefSeq Peptide - NP_998119
swissprot - F6PD98
swissprot - A0A0G2KVP5
swissprot - Q6Q6F4
ZFIN ID - ZDB-GENE-030821-2
ZFIN ID - ZDB-GENE-040616-2
Ensembl - ENSDARG00000004861
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
esrrb / estrogen-related receptor beta / O95718*ENSDARG0000010084768
esrrgb / estrogen-related receptor gamma bENSDARG0000001169663
esrra / estrogen-related receptor alpha / O08580* / P11474* / Steroid hormone receptor ERR1 *ENSDARG0000006926652
esr1 / estrogen receptor 1 / P03372* / P19785* / Estrogen receptor *ENSDARG0000000411130
esr2a / estrogen receptor 2a / ESR2* / O08537* / Q92731* / estrogen receptor 2* / Estrogen receptor beta *ENSDARG0000001645430
esr2b / estrogen receptor 2b / ESR2* / O08537* / Q92731* / estrogen receptor 2* / Estrogen receptor beta *ENSDARG0000003418129
FO681288.3 / ESRRG* / P62508* / P62509* / estrogen related receptor gamma* / Mus musculus estrogen-related receptor gamma (Esrrg), transcript variant 5, mRNA.*ENSDARG0000011104327
nr4a2a / nuclear receptor subfamily 4, group A, member 2a / NR4A2* / Q06219* / P43354* / nuclear receptor subfamily 4 group A member 2*ENSDARG0000001700724
nr4a1 / nuclear receptor subfamily 4, group A, member 1 / P12813* / P22736*ENSDARG0000000079623
esrrd / estrogen-related receptor deltaENSDARG0000001506423
nr4a2b / nuclear receptor subfamily 4, group A, member 2bENSDARG0000004453223
nr4a3 / nuclear receptor subfamily 4, group A, member 3 / Q92570* / Q9QZB6*ENSDARG0000005585423
nr3c2 / nuclear receptor subfamily 3, group C, member 2 / P08235*ENSDARG0000010208222
nr3c1 / nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) / P04150* / nuclear receptor subfamily 3 group C member 1*ENSDARG0000002503221
ar / androgen receptor / P10275* / P19091*ENSDARG0000006797620
pgr / progesterone receptor / P06401* / Q00175*ENSDARG0000003596619


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR013088  Zinc finger, NHR/GATA-type
 IPR024178  Oestrogen receptor/oestrogen-related receptor
 IPR027289  Oestrogen-related receptor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IDA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 biological_processGO:0071599 otic vesicle development IMP
 cellular_componentGO:0005634 nucleus IC
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0005496 steroid binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000029 hindbrain hindbrain swollen , abnormal
Show

 ZFA:0000051 otic vesicle otic vesicle circular , abnormal
Show

 ZFA:0000107 eye eye malformed , abnormal
Show

 ZFA:0000109 forebrain forebrain shape , abnormal
Show

 ZFA:0001058 caudal fin caudal fin malformed , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
Show

 ZFA:0001273 ventral mandibular arch ventral mandibular arch decreased size , abnormal
Show

 ZFA:0001617 otolith otolith decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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