ENSDARG00000104256


Danio rerio

Features
Gene ID: ENSDARG00000104256
  
Biological name :bco1
  
Synonyms : bco1 / beta-carotene oxygenase 1
  
Possible biological names infered from orthology : Beta,beta-carotene 15,15-dioxygenase / Q9HAY6 / Q9JJS6
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 65261354
Gene end: 65290474
  
Corresponding Affymetrix probe sets: Dr.12383.2.S1_a_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000135082
Ensembl peptide - ENSDARP00000137596
Ensembl peptide - ENSDARP00000136395
NCBI entrez gene - 84039     See in Manteia.
RefSeq - NM_001328495
RefSeq Peptide - NP_001315424
swissprot - A0A0R4IPQ5
swissprot - A0A0R4IH96
swissprot - Q7ZTS0
ZFIN ID - ZDB-GENE-010508-1
Ensembl - ENSDARG00000104256
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BCO1ENSGALG00000005408Gallus gallus
 BCO1ENSG00000135697Homo sapiens
 Bco1ENSMUSG00000031845Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
bco1l / beta-carotene oxygenase 1, like / BCO1* / Q9HAY6* / Q9JJS6* / beta-carotene oxygenase 1* / Beta,beta-carotene 15,15-dioxygenase *ENSDARG0000010365947
bco2l / beta-carotene 15, 15-dioxygenase 2, like / BCO2* / Q9BYV7* / Q99NF1* / beta-carotene oxygenase 2* / Beta,beta-carotene 9,10-oxygenase *ENSDARG0000002762039
bco2a / beta-carotene oxygenase 2a / BCO2* / Q99NF1* / Q9BYV7* / beta-carotene oxygenase 2* / Beta,beta-carotene 9,10-oxygenase *ENSDARG0000005572237
bco2b / beta-carotene oxygenase 2b / BCO2* / Q99NF1* / Q9BYV7* / beta-carotene oxygenase 2* / Beta,beta-carotene 9,10-oxygenase *ENSDARG0000004171536
A9C3R9 / rpe65b / retinal pigment epithelium-specific protein 65b / RPE65* / Q91ZQ5* / Q16518* / Retinoid isomerohydrolase * / RPE65, retinoid isomerohydrolase*ENSDARG0000009475231
A9C3R8 / rpe65c / retinal pigment epithelium-specific protein 65c / RPE65* / Q91ZQ5* / Q16518* / Retinoid isomerohydrolase * / RPE65, retinoid isomerohydrolase*ENSDARG0000005442030
rpe65a / Q6PBW5 / retinal pigment epithelium-specific protein 65a / RPE65* / Q16518* / RPE65, retinoid isomerohydrolase*ENSDARG0000000748029


Protein motifs (from Interpro)
Interpro ID Name
 IPR004294  Carotenoid oxygenase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001754 eye photoreceptor cell differentiation IMP
 biological_processGO:0030902 hindbrain development IMP
 biological_processGO:0055114 oxidation-reduction process IEA
 molecular_functionGO:0003834 beta-carotene 15,15"-monooxygenase activity IDA
 molecular_functionGO:0004497 monooxygenase activity IEA
 molecular_functionGO:0008198 ferrous iron binding NAS
 molecular_functionGO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Retinoid metabolism and transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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