ENSDARG00000026759


Danio rerio

Features
Gene ID: ENSDARG00000026759
  
Biological name :ldlrb
  
Synonyms : ldlrb / low density lipoprotein receptor b
  
Possible biological names infered from orthology : LDLR / low density lipoprotein receptor / P01130 / P35951
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 102506
Gene end: 109626
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000141207
Ensembl peptide - ENSDARP00000126428
Ensembl peptide - ENSDARP00000126465
swissprot - A0A0R4IYS9
swissprot - K7DYA0
swissprot - K7DYD6
ZFIN ID - ZDB-GENE-040426-1254
Ensembl - ENSDARG00000026759
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LDLRENSG00000130164Homo sapiens
 LdlrENSMUSG00000032193Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ldlra / low density lipoprotein receptor a / LDLR* / P35951* / P01130* / low density lipoprotein receptor*ENSDARG0000002947652
lrp8 / low density lipoprotein receptor-related protein 8, apolipoprotein e receptor / Q14114* / Q924X6* / LDL receptor related protein 8* / Low-density lipoprotein receptor-related protein 8 *ENSDARG0000007007448
vldlr / very low density lipoprotein receptor / P98155* / P98156*ENSDARG0000000625743
lrp2b / low density lipoprotein receptor-related protein 2bENSDARG0000000790635
lrp1aa / low density lipoprotein receptor-related protein 1Aa / LRP1* / Q07954* / LDL receptor related protein 1*ENSDARG0000009782734
lrp1bb / low density lipoprotein receptor-related protein 1Bb / LRP1B* / Q9NZR2* / LDL receptor related protein 1B*ENSDARG0000006151734
lrp1ab / low density lipoprotein receptor-related protein 1Ab / LRP1* / Q07954* / LDL receptor related protein 1*ENSDARG0000002914634
lrp2a / low density lipoprotein receptor-related protein 2a / LRP2* / P98164* / A2ARV4* / LDL receptor related protein 2* / low density lipoprotein receptor-related protein 2*ENSDARG0000010250634
lrp1ba / low density lipoprotein receptor-related protein 1Ba / LRP1B* / Q9NZR2* / LDL receptor related protein 1B*ENSDARG0000000478933
lrp13 / low-density lipoprotein receptor related-protein 13 / Gm19410*ENSDARG0000002347929
si:dkey-88l16.3 / Gm19410*ENSDARG0000009405528
lrp5 / low density lipoprotein receptor-related protein 5 / O75197* / LDL receptor related protein 5*ENSDARG0000000692119
lrp6 / low density lipoprotein receptor-related protein 6 / O75581* / LDL receptor related protein 6*ENSDARG000001001432
CABZ01071171.1 / Danio rerio low density lipoprotein receptor-related protein 4 (lrp4), mRNA. / LRP4* / Q8VI56* / O75096* / LDL receptor related protein 4* / Low-density lipoprotein recepto...ENSDARG000001163532
lrp1ba / low density lipoprotein receptor-related protein 1Ba / Gm19410*ENSDARG000000941711


Protein motifs (from Interpro)
Interpro ID Name
 IPR000033  LDLR class B repeat
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR002172  Low-density lipoprotein (LDL) receptor class A repeat
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR023415  Low-density lipoprotein (LDL) receptor class A, conserved site
 IPR032931  Very low-density lipoprotein receptor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis
Chylomicron clearance
LDL clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr