ENSDARG00000097827


Danio rerio

Features
Gene ID: ENSDARG00000097827
  
Biological name :lrp1aa
  
Synonyms : low density lipoprotein receptor-related protein 1Aa / lrp1aa
  
Possible biological names infered from orthology : LDL receptor related protein 1 / LRP1 / Q07954
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 1628538
Gene end: 1864288
  
Corresponding Affymetrix probe sets: Dr.6174.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000133829
Ensembl peptide - ENSDARP00000142123
Ensembl peptide - ENSDARP00000142391
Ensembl peptide - ENSDARP00000142425
Ensembl peptide - ENSDARP00000142561
Ensembl peptide - ENSDARP00000142573
Ensembl peptide - ENSDARP00000129678
swissprot - A0A0H2UKL4
swissprot - A0A140LFU7
swissprot - A0A140LGL2
swissprot - A0A140LGP6
swissprot - A0A140LH31
swissprot - A0A140LH43
swissprot - X1WHG6
ZFIN ID - ZDB-GENE-030131-7889
Ensembl - ENSDARG00000097827
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRP1ENSG00000123384Homo sapiens
 Lrp1ENSMUSG00000040249Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lrp1ab / low density lipoprotein receptor-related protein 1Ab / LRP1* / Q07954* / LDL receptor related protein 1*ENSDARG0000002914681
lrp1bb / low density lipoprotein receptor-related protein 1Bb / LRP1B* / Q9NZR2* / LDL receptor related protein 1B*ENSDARG0000006151756
lrp1ba / low density lipoprotein receptor-related protein 1Ba / LRP1B* / Q9NZR2* / LDL receptor related protein 1B*ENSDARG0000000478945
lrp2a / low density lipoprotein receptor-related protein 2a / LRP2* / P98164* / A2ARV4* / LDL receptor related protein 2* / low density lipoprotein receptor-related protein 2*ENSDARG0000010250635
lrp2b / low density lipoprotein receptor-related protein 2bENSDARG0000000790634
lrp1ba / low density lipoprotein receptor-related protein 1Ba / Gm19410*ENSDARG0000009417117
lrp5 / low density lipoprotein receptor-related protein 5 / O75197* / LDL receptor related protein 5*ENSDARG0000000692111
lrp13 / low-density lipoprotein receptor related-protein 13 / Gm19410*ENSDARG000000234798
si:dkey-88l16.3 / Gm19410*ENSDARG000000940558
lrp8 / low density lipoprotein receptor-related protein 8, apolipoprotein e receptor / Q14114* / Q924X6* / LDL receptor related protein 8* / Low-density lipoprotein receptor-related protein 8 *ENSDARG000000700747
vldlr / very low density lipoprotein receptor / P98155* / P98156*ENSDARG000000062577
ldlrb / low density lipoprotein receptor b / LDLR* / P35951* / P01130* / low density lipoprotein receptor*ENSDARG000000267596
ldlra / low density lipoprotein receptor a / LDLR* / P35951* / P01130* / low density lipoprotein receptor*ENSDARG000000294766
CABZ01071171.1 / Danio rerio low density lipoprotein receptor-related protein 4 (lrp4), mRNA. / LRP4* / Q8VI56* / O75096* / LDL receptor related protein 4* / Low-density lipoprotein recepto...ENSDARG000001163536
lrp6 / low density lipoprotein receptor-related protein 6 / O75581* / LDL receptor related protein 6*ENSDARG000001001435


Protein motifs (from Interpro)
Interpro ID Name
 IPR000033  LDLR class B repeat
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR002172  Low-density lipoprotein (LDL) receptor class A repeat
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013032  EGF-like, conserved site
 IPR018097  EGF-like calcium-binding, conserved site
 IPR023415  Low-density lipoprotein (LDL) receptor class A, conserved site
 IPR026823  Complement Clr-like EGF domain
 IPR030799  Low-density lipoprotein receptor-related protein 4
 IPR032485  Domain of unknown function DUF5050


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:1901342 regulation of vasculature development IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Scavenging of heme from plasma


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001117 post-vent region post-vent region wholly dorsalized , abnormal
Show

 ZFA:0001285 intersegmental vessel intersegmental vessel morphology , abnormal
Show

 ZFA:0001286 caudal vein plexus caudal vein plexus decreased branchiness , abnormal
Show

 ZFA:0005024 trunk vasculature trunk vasculature morphology , abnormal
Show

 ZFA:0005249 vasculature vasculature morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr